Transcript 1640 | MetamORF

Transcript

ID CARD

MetamORF ID

1640

ENSMUST00000051401

Name

Cldn4-201

Strand

Biotype

protein_coding

Start-end positions

134945119-134946934

CDS Start-stop positions

134946113-134946745

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:12740

Aliases

Cep-r,
Cldn4, Cpetr, Cpetr1,
ENSMUSG00000047501, MGI:1313314, NCBI:12740,
OFF:Cldn4

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1239756	51	AGG ...	RSW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1236636	114	ACG ...	TTS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1089125	180	GTG ...	VSL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, v6-5
1234633	30	AGG ...	RTR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1310670	66	CTG ...	LGG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1085114	258	GTG ...	VHQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1718	108	TTG ...	LWS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Skin_tumor, v6-5
1237190	183	AAG ...	KHA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1085256	150	GTG ...	VFA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	E14, v6-5
1239367	258	ACG ...	TSS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1240372	102	ACG ...	TTR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1240026	126	ATC ...	IGL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
1086609	141	CTG ...	LTP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, v6-5
829082	33	GTG ...	VVT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, v6-5
1085147	213	TTG ...	LVA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, v6-5
831041	33	GTG ...	VHR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14
1087169	30	GTG ...	VLW ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
831229	36	CTG ...	LVH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, R1E
1086338	174	CTG ...	LRL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, v6-5
1799	249	CTG ...	LHG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Skin_tumor, v6-5
1086999	156	CTG ...	LDR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1639	93	TTG ...	LTP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Skin_tumor, v6-5
1086162	228	CTG ...	LQC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, v6-5

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