Transcript 9710 | MetamORF

Transcript

ID CARD

MetamORF ID

9710

ENSMUST00000048155

Name

Rbm25-201

Strand

Biotype

protein_coding

Start-end positions

83632252-83683123

CDS Start-stop positions

83642644-83681595

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:67039

Aliases

2600011C06Rik,
2610015J01Rik, A130095G20Rik, AI159652,
AL023075, AU043498, ENSMUSG00000010608,
MGI:1914289, NCBI:67039, OFF:Rbm25,
Rbm25, RNPC7

Chr 12

ORFs

68 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
666424	54	TTG ...	LIL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
328282	51	ATG ...	MKT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
460144	39	TTG ...	LLI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
458898	66	ATG ...	MHM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
331362	78	ATG ...	MNG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, R1E, v6-5
666897	165	GTG ...	VIG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
666644	102	ATG ...	MPR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, v6-5
461371	42	TTG ...	LLI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell, v6-5
461023	183	ATG ...	MKK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
663767	54	CTG ...	LWK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
665977	108	CTG ...	LKK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
461078	114	TTG ...	LLK ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
329546	54	CTG ...	LEE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
460388	75	ATG ...	MCP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
780525	57	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
661689	105	CTG ...	LKK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E
1298861	75	AAG ...	KKK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
667465	138	ATG ...	MNE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
461080	72	ATG ...	MWF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
458449	78	ATG ...	MMC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
892675	36	GTG ...	VLP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
663743	150	GTG ...	VLF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
667520	144	ATG ...	MTF ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, R1E, v6-5
461270	174	ATG ...	MHM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
323077	69	TTG ...	LRK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
459371	42	ATG ...	MMM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
661920	81	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
667177	75	TTG ...	LRK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
461158	168	ATG ...	MNE ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell
460880	132	TTG ...	LER ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell, v6-5
779986	30	TTG ...	LGN ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
666325	51	ATG ...	MGT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E
459778	111	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
667018	186	GTG ...	VLF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
9753	135	GTG ...	VTA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Skin_tumor, Spleen_B_cell
661802	117	CTG ...	LPV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1133660	48	TTG ...	LFA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
330399	51	CTG ...	LSS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
666446	93	ATG ...	MPP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
667503	75	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
1608082	66	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
660354	81	GTG ...	VMM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
460824	201	TTG ...	LDF ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell, v6-5
663487	102	ATG ...	MNE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
663643	72	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
329362	105	TTG ...	LMP ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
666830	177	CTG ...	LNL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, R1E, v6-5
458447	273	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
663878	105	CTG ...	LMN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
1298856	135	ACG ...	TRG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
459280	126	CTG ...	LCP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
667389	192	GTG ...	VSI ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, v6-5
667109	162	GTG ...	VLS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, R1E, v6-5
662760	69	GTG ...	VVL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
458767	39	ATG ...	MAK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
666426	105	TTG ...	LRK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
322800	90	ATG ...	MRT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
9709	240	GTG ...	VKG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor, Spleen_B_cell
662796	111	GTG ...	VAT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
662430	129	GTG ...	VIG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1296893	60	AGG ...	RSL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
666836	141	CTG ...	LMN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
458471	48	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
9722	189	GTG ...	VNE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Skin_tumor, Spleen_B_cell
661319	90	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
661256	135	CTG ...	LPH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
664956	87	CTG ...	LGM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1489388	33	ATG ...	MKQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC

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