Transcript 40269 | MetamORF

Transcript

ID CARD

MetamORF ID

40269

ENSMUST00000047328

Name

Igfbp2-201

Strand

Biotype

protein_coding

Start-end positions

72824503-72852474

CDS Start-stop positions

72824580-72852162

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:16008

Aliases

AI255832,
ENSMUSG00000039323, IBP-2, Igfbp-2,
Igfbp2, MGI:96437, mIGFBP-2,
NCBI:16008, OFF:Igfbp2

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
136289	96	ATG ...	MIG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1305539	87	AGG ...	RRA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
848070	198	TTG ...	LRA ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E
889743	147	CTG ...	LRL ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E
111533	48	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
848141	138	CTG ...	LLR ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E
336035	57	GTG ...	VMT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
40268	84	ATG ...	MIG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
853191	66	CTG ...	LLS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, NSC, R1E
849339	141	CTG ...	LLL ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E
1303003	213	AGG ...	RCC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1293525	189	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
887665	129	GTG ...	VRT ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E
359567	222	CTG ...	LHA ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E
132857	213	GTG ...	VPN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, R1E
1354699	267	CTG ...	LRP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E
355286	42	CTG ...	LRE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
40952	36	GTG ...	VTS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
303391	231	CTG ...	LPT ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E
889080	84	CTG ...	LRP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E
146727	261	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
849430	105	ATG ...	MRR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E
324942	54	ATG ...	MTT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
850982	174	CTG ...	LRR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E
108482	240	ATG ...	MNS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF

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