Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

510

ID

ENSMUST00000046875

Name

Uggt1-201

Strand

-

Biotype

protein_coding

Start-end positions

36140027-36244305

CDS Start-stop positions

36144226-36244127

CDS Relative positions

-

Sequences

Transcript sequence

AGC ...

Gene

ID

NCBI:320011

Aliases

0910001L17Rik,
A930007H10Rik, AA589501, AI414429,
AI448372, C820010P03Rik, ENSMUSG00000037470,
GT, MGI:2443162, NCBI:320011,
OFF:Uggt1, Ugcgl1, Uggt1,
UGT1


Chr 1

ORFs

143 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

493046 48

ATG ...

MAI ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver,
MEF, Spleen_B_cell
893068 54

ATA ...

IFS ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
330458 129

CTG ...

LRV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
734840 42

ATG ...

MPL ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
1197745 105

AGG ...

RPP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
740122 141

ATG ...

MVR ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Neutrophil, NSC
1625365 93

CTG ...

LLR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
968120 114

AAG ...

KPL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
140712 69

GTG ...

VKR ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF
1307699 180

CTG ...

LSG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1222624 195

ATT ...

ILR ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
966537 147

AAG ...

KTT ...

Ribo-seq
AAG 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, E14
661648 141

TTG ...

LFS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
498851 84

ATG ...

MLS ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Spleen_B_cell,
v6-5
1361643 57

ATG ...

MPY ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, R1E
301711 102

CTG ...

LRL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
897068 78

ATA ...

IAF ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
355030 33

TTG ...

LIL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
740330 156

TTG ...

LFS ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, v6-5
480216 105

CTG ...

LPR ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, MEF
547158 117

TTG ...

LCV ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
538411 84

CTG ...

LVS ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
541137 57

TTG ...

LLT ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
893495 60

ATT ...

ILL ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
116818 57

CTG ...

LDS ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
MEF, NSC
694862 51

TTG ...

LTL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
739686 30

TTG ...

LRI ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1502431 33

TTG ...

LSR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
496141 66

ATG ...

MWL ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver,
MEF, Neutrophil, Spleen_B_cell
719240 75

CTG ...

LIT ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
R1E
666172 60

TTG ...

LWS ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil
297837 39

CTG ...

LLE ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1500347 60

TTG ...

LPD ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E
790463 36

GTG ...

VSW ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, NSC
546549 54

TTG ...

LTL ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC
327336 96

TTG ...

LAM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1305078 51

ATG ...

MSS ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
113387 102

ATG ...

MSW ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, Spleen_B_cell,
v6-5
135608 180

ATG ...

MKN ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Spleen_B_cell
1607256 33

ATG ...

MGC ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
137716 63

TTG ...

LIL ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, MEF, Neutrophil,
Spleen_B_cell, v6-5
498736 45

CTG ...

LDE ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
NSC, Spleen_B_cell, v6-5
964044 96

ATG ...

MAK ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
129415 186

TTG ...

LAM ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
703441 60

ATG ...

MEW ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil
543422 84

TTG ...

LEI ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
896630 33

ATC ...

ITS ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
637248 105

GTG ...

VAR ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14
893009 51

AGG ...

RIP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
125922 219

CTG ...

LRV ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Spleen_B_cell, v6-5
697887 45

CTG ...

LKM ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
54706 186

TTG ...

LQC ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    CDS
    sORF
3T3, B_cell, Liver,
Testis
1487865 66

ATG ...

MTL ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
1480671 42

CTG ...

LRF ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
1605429 30

TTG ...

LFQ ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
43637 198

GTG ...

VLV ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    CDS
    sORF
3T3, B_cell, Liver,
Testis
1454980 30

GTG ...

VSC ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1616456 42

GTG ...

VSY ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1218817 117

AGG ...

RGA ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1456775 30

ATG ...

MEC ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
536733 228

CTG ...

LVN ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
117396 54

ATG ...

MTP ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF
667661 156

GTG ...

VTQ ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
1459291 42

TTG ...

LSC ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
897486 72

ACG ...

TCF ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
664214 33

ATG ...

MLF ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1224502 261

ATC ...

IPA ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
471596 207

CTG ...

LGY ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
1479624 45

CTG ...

LVS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
373845 54

TTG ...

LEF ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
R1E
1113 54

TTG ...

LLT ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Skin_tumor,
v6-5
546217 63

CTG ...

LGG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
645374 30

CTG ...

LRM ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, R1E
690925 39

ATG ...

MLM ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
970342 252

AAG ...

KRS ...

Ribo-seq
AAG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
1215257 192

AGG ...

RPP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
736500 87

TTG ...

LLE ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
111449 69

ATG ...

MRT ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Neutrophil,
NSC, Spleen_B_cell
724798 72

TTG ...

LVL ...

Ribo-seq
TTG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil
549761 78

ATG ...

MAF ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
135203 81

GTG ...

VMG ...

Ribo-seq
GTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Neutrophil,
NSC, Spleen_B_cell
1144493 33

TTG ...

LDG ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
951882 57

ACG ...

TCF ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1131967 60

TTG ...

LSL ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
706002 42

GTG ...

VQV ...

Ribo-seq
GTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC
293254 36

CTG ...

LET ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
748259 174

CTG ...

LPC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
3T3, MEF
967943 84

AGG ...

RNG ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
969426 36

AAG ...

KHR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1508795 69

TTG ...

LGL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
749228 75

TTG ...

LIA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1340365 33

ATG ...

MIS ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
969800 69

ATT ...

IMW ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1195070 165

AAG ...

KRS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
737615 36

CTG ...

LVI ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
41471 69

TTG ...

LTS ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, NSC,
Testis
1341646 78

ATG ...

MVQ ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
509 51

TTG ...

LTS ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
Skin_tumor, v6-5
1587698 36

TTG ...

LMG ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
747348 138

GTG ...

VRL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Neutrophil,
NSC
149144 192

CTG ...

LRL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
546928 48

CTG ...

LSH ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
967206 165

ATA ...

IFT ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
671397 39

ATG ...

MRT ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC
125110 99

TTG ...

LDH ...

Ribo-seq
TTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
R1E, v6-5
1500409 72

ATG ...

MWM ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, R1E
1346348 72

TTG ...

LSL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
896522 141

ACG ...

TTR ...

Ribo-seq
ACG 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, E14
749119 111

GTG ...

VLS ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
v6-5
733348 45

ATG ...

MMP ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
310503 90

ATG ...

MKN ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1165096 123

CTG ...

LPL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1143382 84

ATG ...

MSV ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
339998 75

ATG ...

MSW ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF
1227120 180

CTG ...

LLR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
732640 243

GTG ...

VTQ ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
1454820 81

ATG ...

MMV ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1181542 174

ATC ...

IPA ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
645042 54

TTG ...

LLT ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
746322 51

ATG ...

MTL ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil
969722 135

AGG ...

RRS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
1161026 147

CTG ...

LCR ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
745477 45

CTG ...

LLH ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC, v6-5
539601 162

ATG ...

MSL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, v6-5
134648 78

ATG ...

MGQ ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
MEF, Neutrophil, NSC,
Spleen_B_cell
1182608 48

CTG ...

LPW ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
R1E
1483409 45

CTG ...

LLS ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1079276 66

ATG ...

MPR ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
544429 81

GTG ...

VSY ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF
130335 57

GTG ...

VMT ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC
45738 192

GTG ...

VCL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    CDS
    sORF
3T3, B_cell, Liver,
Testis
640938 147

ATG ...

MSL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
140759 90

ATG ...

MAT ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, Neutrophil, NSC,
Spleen_B_cell
743530 96

GTG ...

VPV ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
501489 105

ATG ...

MTF ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Spleen_B_cell
748216 42

TTG ...

LHL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
v6-5
972942 108

AGG ...

RCQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1344983 39

CTG ...

LGS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
133577 156

CTG ...

LSG ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF
473563 156

GTG ...

VSA ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
710925 66

CTG ...

LAM ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
708447 45

CTG ...

LSH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1309841 57

AGG ...

RTM ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5