Transcript 31841 | MetamORF

Transcript

ID CARD

MetamORF ID

31841

ENSMUST00000046463

Name

Gtpbp1-201

Strand

Biotype

protein_coding

Start-end positions

79690895-79721478

CDS Start-stop positions

79690907-79720099

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:14904

Aliases

AL022987,
AW045683, C85212, ENSMUSG00000042535,
GP-1, Gtpbp, Gtpbp1,
MGI:109443, NCBI:14904, OFF:Gtpbp1

Chr 15

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
359234	51	ATG ...	MVA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
1537782	36	GTG ...	VKL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
364063	72	CTG ...	LTA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
789419	99	ATG ...	MSQ ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC
686685	33	GTG ...	VGA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, v6-5
1537595	39	GTG ...	VGA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1539206	51	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
472170	66	TTG ...	LNL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
471657	108	GTG ...	VAL ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, Spleen_B_cell, v6-5
361436	60	CTG ...	LVE ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
472634	156	TTG ...	LSQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
691175	84	TTG ...	LET ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
470665	54	GTG ...	VGC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
683829	45	CTG ...	LST ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
471429	60	CTG ...	LTS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
366304	87	ATG ...	MAA ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
683611	42	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, v6-5
1539088	48	TTG ...	LAP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
470232	36	GTG ...	VPD ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, Spleen_B_cell, v6-5
789970	81	TTG ...	LTC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain
788809	30	CTG ...	LSW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
471129	45	CTG ...	LWE ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
790003	42	ATG ...	MWG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
470400	72	ATG ...	MRL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
469916	45	GTG ...	VWA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
688700	90	GTG ...	VRT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain
355964	114	ATG ...	MAV ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
362522	81	ATG ...	MAA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E, Spleen_B_cell
682257	36	CTG ...	LAT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF
31840	66	CTG ...	LTA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E, Spleen_B_cell, Testis
690374	63	CTG ...	LAT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC
473602	69	GTG ...	VGE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, v6-5
469979	63	GTG ...	VGE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, v6-5
361827	102	TTG ...	LPA ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell, v6-5
472737	132	CTG ...	LRG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell
687458	42	CTG ...	LAT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, v6-5
791541	48	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, v6-5
789227	123	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
687132	39	CTG ...	LPE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, R1E, v6-5
362892	48	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
358870	36	ATG ...	MTF ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, Spleen_B_cell, v6-5
472450	75	CTG ...	LSS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
1538494	30	CTG ...	LTW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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