Transcript 434 | MetamORF

Transcript

ID CARD

MetamORF ID

434

ENSMUST00000046212

Name

Slc16a1-201

Strand

Biotype

protein_coding

Start-end positions

104638668-104658462

CDS Start-stop positions

104649301-104655722

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:20501

Aliases

AL022710,
ENSMUSG00000032902, Mct1, MGI:106013,
NCBI:20501, OFF:Slc16a1, Slc16a1

Chr 3

ORFs

93 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
132536	33	TTG ...	LIF ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
1219059	36	ATC ...	ISL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1221287	240	ATC ...	ISL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
503062	51	GTG ...	VRN ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1221677	126	ATT ...	IST ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
504407	156	GTG ...	VAS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, R1E, Spleen_B_cell
1220536	90	AAG ...	KNR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
507977	45	CTG ...	LPC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
1220010	60	ATT ...	IFP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
506384	57	TTG ...	LEG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
129006	111	TTG ...	LDS ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
1219586	105	ATT ...	ICL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1218219	75	AAG ...	KLP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1219794	45	AGG ...	RKS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
433	39	TTG ...	LCS ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
131394	75	TTG ...	LGS ...	Ribo-seq	TTG	strong	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
136669	99	CTG ...	LHL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1221186	105	ATA ...	IHP ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1222236	81	AAG ...	KRR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
53913	255	CTG ...	LMQ ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
51827	264	CTG ...	LEN ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1219938	78	AGG ...	RKL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
132736	60	CTG ...	LCL ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
54516	234	TTG ...	LEE ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1222768	246	ATA ...	IQI ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
53111	252	ATG ...	MQI ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, Testis, v6-5
54308	39	ATG ...	MET ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, Testis, v6-5
129173	102	GTG ...	VPF ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1220203	45	ATC ...	IRL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
132313	135	TTG ...	LAS ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1218688	30	ATA ...	IFL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
53793	39	TTG ...	LDP ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
132968	84	CTG ...	LER ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1218839	72	AAG ...	KLH ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
134485	99	TTG ...	LPL ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1222527	42	AGG ...	RPA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
539432	30	CTG ...	LVV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
1221528	57	AAG ...	KEK ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1218045	60	ACG ...	TPE ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
136660	30	ATG ...	MST ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
17172	42	TTG ...	LLC ...	Ribo-seq	TTG	moderate	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
504417	123	TTG ...	LAW ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
508589	165	GTG ...	VQQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Neutrophil, Spleen_B_cell
1220071	270	AGG ...	RKL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
508057	48	ATG ...	MLP ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
894930	282	AAG ...	KNL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1218724	156	ATA ...	IGA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
53135	48	ATG ...	MTC ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
142457	69	ATG ...	MDI ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
132001	69	CTG ...	LHS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, Brain, E14, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1223156	105	ATC ...	IDF ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
507107	141	GTG ...	VTG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
132230	45	ATG ...	MDI ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1219241	48	AGG ...	RTR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
133490	138	TTG ...	LLL ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
127219	66	GTG ...	VST ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
130514	75	ATG ...	MVR ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1221495	36	ATA ...	ILR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF Upstream	E14
504047	72	CTG ...	LRP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Neutrophil, Spleen_B_cell
502572	63	CTG ...	LRL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
129698	123	TTG ...	LQM ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
135488	48	TTG ...	LDL ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
130288	42	TTG ...	LPL ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
55496	99	CTG ...	LRP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
131616	159	GTG ...	VDQ ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
139159	42	TTG ...	LSV ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
135557	54	TTG ...	LAS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
132613	84	CTG ...	LGV ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
504428	144	CTG ...	LVG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, MEF, Spleen_B_cell
504968	138	GTG ...	VQQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Spleen_B_cell
140433	126	ATG ...	MWS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
505864	294	TTG ...	LWR ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, MEF, NSC, R1E, Spleen_B_cell
135910	117	ATG ...	MEC ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
138538	42	ATG ...	MHF ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
134195	36	TTG ...	LVG ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
131363	135	CTG ...	LLL ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
136269	30	TTG ...	LRL ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
52746	96	TTG ...	LPK ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
52178	33	TTG ...	LRC ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
128438	126	TTG ...	LLQ ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
126712	78	GTG ...	VGS ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5
1220139	75	AGG ...	RRS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1221282	117	AGG ...	RAS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1220585	36	ATT ...	ICL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1219911	42	ATA ...	ILD ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
138640	129	CTG ...	LLL ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
140020	132	CTG ...	LEM ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
504688	300	CTG ...	LGL ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
134415	75	CTG ...	LCS ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E
127683	39	GTG ...	VQR ...	Ribo-seq	GTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5
135881	183	TTG ...	LQP ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1223009	132	ATC ...	ISS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1219108	33	AGG ...	RRK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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