Transcript 51774 | MetamORF

Transcript

ID CARD

MetamORF ID

51774

ENSMUST00000046174

Name

Cldn11-201

Strand

Biotype

protein_coding

Start-end positions

31149920-31164324

CDS Start-stop positions

31150150-31163308

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:18417

Aliases

Claudin-11,
Claudin11, Cldn11, ENSMUSG00000037625,
MGI:106925, NCBI:18417, OFF:Cldn11,
Osp, Otm

Chr 3

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52616	54	TTG ...	LSP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
127204	210	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
132049	42	ATG ...	MSK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
53315	111	CTG ...	LRG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
138885	45	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
54239	96	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
53430	207	CTG ...	LQS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
53507	141	GTG ...	VSS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Testis
54219	45	TTG ...	LLP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
55302	54	CTG ...	LQT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
54150	84	CTG ...	LHP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Testis
52683	75	TTG ...	LPS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
128657	30	TTG ...	LQP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
55221	81	CTG ...	LRH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
53768	42	GTG ...	VSR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
130924	48	GTG ...	VPM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
141104	240	GTG ...	VPG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
133079	33	CTG ...	LYV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
52726	36	CTG ...	LSR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
53119	66	CTG ...	LQL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
53151	66	CTG ...	LRH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
52950	78	CTG ...	LGG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
54543	78	CTG ...	LVP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Testis
51773	120	GTG ...	VLA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
52298	36	TTG ...	LDW ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
139396	225	CTG ...	LCH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
53025	42	CTG ...	LPP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
53745	39	CTG ...	LQT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
128170	258	TTG ...	LDR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
52389	138	CTG ...	LHA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
53820	117	ATG ...	MHS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Testis
53775	45	CTG ...	LPK ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
52207	147	GTG ...	VAV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Testis
51867	147	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
52163	114	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
53603	39	TTG ...	LAT ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
51926	105	TTG ...	LEK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Testis
127592	213	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
53142	42	TTG ...	LAS ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
128224	57	ATG ...	MPR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain

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