Transcript 129326

Transcript

ID CARD

MetamORF ID

129326

ENSMUST00000043983

Name

Igsf3-201

Strand

Biotype

protein_coding

Start-end positions

101377083-101463059

CDS Start-stop positions

101378450-101460037

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:78908

Aliases

1700016K10Rik,
2810035F16Rik, 4833439O17Rik, ENSMUSG00000042035,
Igsf3, MGI:1926158, mKIAA0466,
NCBI:78908, OFF:Igsf3

Chr 3

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
135904	48	TTG ...	LGF ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
137517	30	ATG ...	MAN ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1223436	144	GTG ...	VRD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
137024	45	ATG ...	MPA ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	C2C12, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
1174091	66	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1219561	171	ATG ...	MEM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	E14, Glioma, Liver, MEF, MESC
310	33	CTG ...	LKI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1223982	147	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	Brain, E14
135931	30	GTG ...	VCP ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	NSC, R1E, v6-5
1171389	81	CTG ...	LRA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, v6-5
129816	165	ATG ...	MDF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
126840	117	ATG ...	MDG ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	C2C12, E14, Glioma, Liver, MEF, MESC, v6-5
1173998	69	GTG ...	VGP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
135453	45	ATG ...	MLP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
1173896	75	CTG ...	LTT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1553391	114	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
134040	156	TTG ...	LMK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
135073	36	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
131829	36	CTG ...	LSE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
135385	69	CTG ...	LQH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1224192	153	TTG ...	LGG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1553366	111	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
131261	39	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
129325	75	TTG ...	LGD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1173925	72	ATG ...	MPA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
136132	99	TTG ...	LTK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain

Export data