Transcript 3763 | MetamORF

Transcript

ID CARD

MetamORF ID

3763

ENSMUST00000043839

Name

F11r-201

Strand

Biotype

protein_coding

Start-end positions

171437535-171464603

CDS Start-stop positions

171437641-171463094

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:16456

Aliases

9130004G24,
AA638916, ENSMUSG00000038235, ESTM33,
F11r, JAM, JAM-1,
JAM-A, Jcam, Jcam1,
Ly106, MGI:1321398, NCBI:16456,
OFF:F11r

Chr 1

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32660	105	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
26404	114	CTG ...	LFP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, Testis
24985	96	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Testis
37211	87	ATG ...	MVP ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E, Testis, v6-5
1363624	90	TTG ...	LHG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1605961	84	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
942202	42	AGG ...	RSA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
14422	54	CTG ...	LHR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
991809	81	CTG ...	LHL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, R1E
1182117	30	AGG ...	RPR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1213369	159	ATA ...	ILL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
936693	39	AAG ...	KPG ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
939228	33	ATG ...	MWG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
891715	30	CTG ...	LSP ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E
25114	42	GTG ...	VSP ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E, Testis
317440	51	ATG ...	MRT ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
981005	45	GTG ...	VEV ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, R1E, v6-5
1299767	123	ATC ...	IAR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
28178	93	ATG ...	MES ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, R1E, Testis
853725	45	GTG ...	VNT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E
16492	93	GTG ...	VFC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, R1E, Skin_tumor
3762	66	CTG ...	LPG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, R1E, Skin_tumor
36583	90	ATG ...	MMV ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, R1E, Testis, v6-5
1147243	81	CTG ...	LVQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E, v6-5
870833	60	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E
74169	48	GTG ...	VVN ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E, Testis
1202626	48	ATA ...	IWD ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1201631	72	ATA ...	ILL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
21848	150	CTG ...	LLE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, Testis
32419	54	TTG ...	LIV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Testis
1209903	135	ATA ...	IWD ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1203684	66	ATT ...	IPG ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
34245	99	TTG ...	LLC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Testis
20852	72	CTG ...	LNI ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E, Testis, v6-5
15997	153	CTG ...	LPG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E, Skin_tumor, Testis, v6-5
15766	99	ATG ...	MSV ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, R1E, Skin_tumor
46219	147	TTG ...	LHG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Testis
1187550	57	GTG ...	VDR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF

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