Transcript 17428 | MetamORF

Transcript

ID CARD

MetamORF ID

17428

ENSMUST00000043419

Name

Eif5a-201

Strand

Biotype

protein_coding

Start-end positions

69916720-69921386

CDS Start-stop positions

69917439-69919315

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:276770

Aliases

AA410058,
D19Wsu54e, eIF-4D, eIF-5A,
eIF-5A-1, eIF-5A1, Eif4d,
Eif5a, Eif5a1, ENSMUSG00000078812,
MGI:106248, NCBI:276770, OFF:Eif5a

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
90932	42	ATG ...	MGL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
419724	189	TTG ...	LVG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF Upstream	3T3, C2C12, E14
446041	42	CTG ...	LRT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, BMDC
19542	57	GTG ...	VFP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
933618	99	AGG ...	RQQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
938151	105	AGG ...	RSS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
451471	60	TTG ...	LRG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14
17427	72	CTG ...	LLG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, E14, Testis
419378	90	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14
455178	162	TTG ...	LGS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, E14, Spleen_B_cell, v6-5
419310	30	AGG ...	RSS ...	Ribo-seq	AGG		3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, E14
23594	108	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	Testis
9217	36	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
21723	63	ATG ...	MLV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
23326	243	ATG ...	MQG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
641586	39	GTG ...	VVE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
937431	171	AGG ...	RQQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	BMDC
23592	156	GTG ...	VRE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	Testis
1292401	249	GTG ...	VCS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
645083	36	GTG ...	VEL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14
453066	57	GTG ...	VGS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, E14
448991	33	TTG ...	LVS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14
657675	147	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	3T3, E14
23703	129	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	BMDC, E14, Testis
24069	186	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	Testis
775294	291	TTG ...	LVG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
9411	69	ATG ...	MKI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
934837	78	ATA ...	IGL ...	Ribo-seq	ATA	strong	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
24224	168	TTG ...	LDF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	Testis

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