Transcript 10137 | MetamORF

Transcript

ID CARD

MetamORF ID

10137

ENSMUST00000042834

Name

Uqcrfs1-201

Strand

Biotype

protein_coding

Start-end positions

30540308-30545362

CDS Start-stop positions

30540731-30545247

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:66694

Aliases

4430402G14Rik,
AI875505, ENSMUSG00000038462, MGI:1913944,
NCBI:66694, OFF:Uqcrfs1, Uqcrfs1

Chr 13

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
336882	33	ATG ...	MER ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
1303107	123	ATT ...	ILV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
338724	159	CTG ...	LLT ...	Ribo-seq	CTG	weak	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
847835	57	CTG ...	LWV ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, v6-5
943088	48	AGG ...	RRF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
942363	42	AAG ...	KKA ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
337020	156	CTG ...	LTY ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
332109	165	GTG ...	VLL ...	Ribo-seq	GTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
337571	153	TTG ...	LVV ...	Ribo-seq	TTG	strong	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
338774	84	CTG ...	LYS ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
27452	63	TTG ...	LIA ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Testis
10136	63	TTG ...	LCA ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell
1302549	54	ATA ...	IEP ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
332068	168	GTG ...	VSV ...	Ribo-seq	GTG	weak	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
943318	267	ACG ...	TKG ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
339757	144	CTG ...	LSP ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, Spleen_B_cell
461577	45	GTG ...	VAR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
942234	90	AGG ...	RCL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
943738	69	AAG ...	KFL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
339255	84	ATG ...	MTP ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
27064	72	CTG ...	LKF ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis
27143	147	GTG ...	VYP ...	Ribo-seq	GTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
672914	48	TTG ...	LLM ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, v6-5
464060	69	TTG ...	LCT ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
27294	87	CTG ...	LTI ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
331994	117	GTG ...	VAI ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell
1304745	108	ATT ...	IAP ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
333251	105	ATG ...	MGY ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
847410	51	GTG ...	VLL ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, v6-5
334700	75	CTG ...	LAG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell
336959	96	ATG ...	MGH ...	Ribo-seq	ATG	strong	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
27425	33	GTG ...	VRL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Testis, v6-5
27351	75	GTG ...	VLK ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
1301988	30	AGG ...	RKL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
27751	135	CTG ...	LLL ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
339474	138	TTG ...	LQT ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
670871	30	ATG ...	MWS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
26430	129	CTG ...	LSV ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
332119	69	GTG ...	VPR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell
26964	108	ATG ...	MSR ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, Testis
27625	30	CTG ...	LPT ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Testis, v6-5
333897	54	CTG ...	LHL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, R1E, v6-5
462102	36	TTG ...	LTR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, Spleen_B_cell
10496	117	CTG ...	LIS ...	Ribo-seq	CTG	weak	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, v6-5
1304472	132	ACG ...	TQE ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
334078	234	TTG ...	LSS ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
669626	69	CTG ...	LQL ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
672717	42	ATG ...	MRP ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
335198	108	CTG ...	LKG ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
943003	102	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
337062	120	TTG ...	LVA ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell

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