Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

537184

ID

ENSMUST00000042498

Name

Hdlbp-201

Strand

-

Biotype

protein_coding

Start-end positions

93407762-93445686

CDS Start-stop positions

93408173-93440755

CDS Relative positions

-

Sequences

Transcript sequence

GCC ...

Gene

ID

NCBI:110611

Aliases

1110005P14Rik,
AA960365, AI118566, D1Ertd101e,
ENSMUSG00000034088, Hdlbp, MGI:99256,
NCBI:110611, OFF:Hdlbp


Chr 1

ORFs

54 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

674418 105

ATG ...

MCY ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
669110 51

GTG ...

VFS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
676459 84

GTG ...

VIL ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
731563 105

CTG ...

LAR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
546197 144

CTG ...

LPL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
737832 189

CTG ...

LGR ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
134049 96

CTG ...

LRK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
860744 87

ATG ...

MKS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
541025 192

CTG ...

LGF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
726924 84

GTG ...

VIK ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
740860 207

CTG ...

LYQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
128760 54

TTG ...

LGR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
357515 120

GTG ...

VNK ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
756 138

GTG ...

VKR ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver
815580 45

ATG ...

MLP ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Liver
16271 117

TTG ...

LTF ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver
99144 135

ATG ...

MTL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
303898 99

ATG ...

MLL ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
735838 114

TTG ...

LVR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
982132 150

CTG ...

LLP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
1373 99

TTG ...

LLD ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
649282 66

CTG ...

LAS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver
806263 48

CTG ...

LPA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
482484 129

TTG ...

LER ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
807871 54

GTG ...

VKL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
252 102

TTG ...

LLL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
307180 114

ATG ...

MPS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
660588 69

TTG ...

LRE ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
464362 96

CTG ...

LAR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
13068 132

GTG ...

VKR ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver
745648 279

ATG ...

MRW ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
109 159

ATG ...

MCL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
693742 54

ATG ...

MRW ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
459173 51

CTG ...

LEF ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
735275 171

TTG ...

LWV ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
980619 117

ATG ...

MWW ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
472312 42

CTG ...

LLR ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
196278 48

GTG ...

VKL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
487878 102

CTG ...

LQR ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Liver
108095 174

ATG ...

MTL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
740262 108

CTG ...

LQR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver
1288701 129

AAG ...

KRA ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
138960 117

GTG ...

VLT ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
538129 165

GTG ...

VKS ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
1237396 45

AGG ...

RLC ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
14572 111

TTG ...

LTF ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver
982967 153

CTG ...

LLL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
864539 90

CTG ...

LRP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
642390 78

TTG ...

LYN ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
697602 84

CTG ...

LRP ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver
701168 84

CTG ...

LPL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
150429 153

ATG ...

MPS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
861602 72

CTG ...

LAS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
982264 39

ATG ...

MRK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5