Transcript 22341 | MetamORF

Transcript

ID CARD

MetamORF ID

22341

ENSMUST00000041683

Name

Usp22-201

Strand

Biotype

protein_coding

Start-end positions

61151785-61175055

CDS Start-stop positions

61154471-61174885

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:216825

Aliases

AI427806,
ENSMUSG00000042506, MGI:2144157, NCBI:216825,
OFF:Usp22, Usp22

Chr 11

ORFs

69 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19813	156	CTG ...	LRS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, R1E, Spleen_B_cell
309397	51	TTG ...	LPL ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
309372	63	GTG ...	VRC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, R1E, Spleen_B_cell
23478	123	ATG ...	MTM ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Testis, v6-5
318272	81	GTG ...	VSS ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
22608	57	GTG ...	VGS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Testis, v6-5
317448	240	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, R1E
1528644	75	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
296088	72	GTG ...	VFH ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell
293504	30	GTG ...	VRC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
453937	30	ATG ...	MCL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
311078	57	GTG ...	VLE ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E
23846	63	ATG ...	MHP ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Testis
314823	84	GTG ...	VWL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, v6-5
303405	33	GTG ...	VDA ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, R1E, Spleen_B_cell
1036261	201	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
772309	111	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC
291862	60	CTG ...	LHR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell
301039	42	CTG ...	LCL ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
315623	39	ATG ...	MPS ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5
295919	54	TTG ...	LER ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, Spleen_B_cell
1527516	156	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
297181	204	CTG ...	LPR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, NSC, R1E
1294507	129	AAG ...	KVM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
23483	42	ATG ...	MLH ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Testis, v6-5
291656	300	GTG ...	VGA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Spleen_B_cell
23373	75	TTG ...	LTR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell, Testis, v6-5
23462	150	CTG ...	LAA ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, NSC, R1E, Spleen_B_cell, Testis
318761	75	ATG ...	MGR ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
300151	30	GTG ...	VSA ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, NSC, Spleen_B_cell, v6-5
23236	117	ATG ...	MGR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Testis, v6-5
1294800	213	ACG ...	TPG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
314808	45	ATG ...	MTM ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
317476	72	TTG ...	LAV ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
23435	45	CTG ...	LML ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Testis, v6-5
302722	96	CTG ...	LCL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
450269	69	TTG ...	LNT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E, Spleen_B_cell
994145	198	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1295936	150	ACG ...	TSS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1288915	288	ATG ...	MTM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
658414	300	TTG ...	LSL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, v6-5
22340	126	GTG ...	VMT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Testis, v6-5
307007	81	CTG ...	LGH ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1484227	123	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
311724	246	TTG ...	LFS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14
313559	96	TTG ...	LPK ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
314758	282	TTG ...	LFS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
450991	90	CTG ...	LPC ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
91153	135	CTG ...	LSW ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, NSC, R1E, Spleen_B_cell
309810	279	CTG ...	LSS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14
316503	192	ATG ...	MSS ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
1295777	300	GTG ...	VAT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, NSC
308570	81	CTG ...	LRH ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
318328	171	CTG ...	LSW ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, R1E, Spleen_B_cell
1283987	282	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
292120	93	ATG ...	MSS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
318082	174	ATG ...	MSS ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
17319	114	CTG ...	LAA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, NSC, R1E
447949	30	CTG ...	LLL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Spleen_B_cell
1294468	108	AAG ...	KPT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
452090	63	GTG ...	VPR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell
774742	102	TTG ...	LAV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
22747	162	TTG ...	LQP ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
774868	30	GTG ...	VLR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, R1E
313321	282	CTG ...	LNS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, R1E, v6-5
23701	300	GTG ...	VRC ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, R1E, Testis, v6-5
449896	39	CTG ...	LAL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell, v6-5
23970	192	CTG ...	LRS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, R1E, Spleen_B_cell, Testis
1284092	168	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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