Transcript 14737 | MetamORF

Transcript

ID CARD

MetamORF ID

14737

ENSMUST00000039631

Name

Acta2-201

Strand

Biotype

protein_coding

Start-end positions

34241090-34255336

CDS Start-stop positions

34241667-34252553

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:11475

Aliases

0610041G09Rik,
a-SMA, Acta2, Actvs,
alphaSMA, ENSMUSG00000035783, MGI:87909,
NCBI:11475, OFF:Acta2, SMAalpha,
SMalphaA

Chr 19

ORFs

67 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1204195	147	ACG ...	TLL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
43547	96	ATG ...	MAL ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, Testis, v6-5
43248	51	TTG ...	LGW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Testis
43228	165	CTG ...	LQN ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, E14, MEF, NSC, Testis, v6-5
41688	129	GTG ...	VKR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, Testis, v6-5
43520	66	CTG ...	LCC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Testis, v6-5
1158158	147	CTG ...	LDR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
727388	63	GTG ...	VMM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
43327	90	CTG ...	LGS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Testis, v6-5
411843	123	AGG ...	RKT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
976551	126	GTG ...	VAP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
976598	96	ACG ...	TNA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
976482	45	ATA ...	ITS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
405597	33	GTG ...	VWP ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, v6-5
411631	54	ATG ...	MLP ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, C2C12, E14, MEF, v6-5
976630	69	AGG ...	RLC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
411743	42	CTG ...	LFS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14, MEF, v6-5
1364100	123	GTG ...	VIL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
723113	75	TTG ...	LKM ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
725718	51	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
411962	33	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, MEF
976496	30	CTG ...	LAE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
976486	48	ACG ...	TLP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
43396	147	CTG ...	LLQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Overlapping sORF Upstream	C2C12, E14, MEF, NSC, Testis, v6-5
726157	66	CTG ...	LVM ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
723072	36	TTG ...	LSV ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
42435	60	GTG ...	VMM ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, Testis, v6-5
41411	93	ATG ...	MAL ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, C2C12, E14, MEF, Testis, v6-5
721244	63	CTG ...	LVM ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
976548	75	ATG ...	MRA ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
42201	162	TTG ...	LPL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, MEF, Testis, v6-5
43118	132	GTG ...	VKR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, Testis, v6-5
42528	87	CTG ...	LGS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, C2C12, E14, MEF, Testis, v6-5
804929	30	ATG ...	MKP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, v6-5
720438	42	GTG ...	VRL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, NSC
976623	99	ACG ...	TAS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
42417	144	CTG ...	LLQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14, MEF, NSC, Testis, v6-5
1205462	129	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
976639	45	CTG ...	LFS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1205312	123	AAG ...	KTA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
724107	63	TTG ...	LEW ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
1202021	120	AAG ...	KTA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
43388	81	ATG ...	MWL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Testis, v6-5
1204040	75	AGG ...	RPA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
725987	60	ATG ...	MML ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
720071	69	ATG ...	MRW ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC
42036	33	GTG ...	VEK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Testis, v6-5
43329	108	TTG ...	LRP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Testis, v6-5
976615	78	ACG ...	TTW ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1205188	78	AGG ...	RPA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
723872	39	ATG ...	MWG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, v6-5
724630	57	ATG ...	MML ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
721707	39	CTG ...	LPR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
725403	57	ATG ...	MLP ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
720707	54	ATG ...	MPS ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
43354	96	ATG ...	MSP ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Testis, v6-5
43571	201	ATG ...	MLC ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, E14, MEF, Testis, v6-5
43623	102	TTG ...	LET ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Testis, v6-5
1160250	51	ATG ...	MPL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1203318	126	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
43555	171	CTG ...	LSL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, E14, MEF, Testis, v6-5
14736	45	CTG ...	LDV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor, v6-5
976576	66	ATG ...	MPC ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1205525	150	ACG ...	TLL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
411896	129	AGG ...	RDP ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, MEF
976478	30	GTG ...	VTS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1721922	138	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF

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