Transcript 57541 | MetamORF

Transcript

ID CARD

MetamORF ID

57541

ENSMUST00000038107

Name

Cited2-201

Strand

Biotype

protein_coding

Start-end positions

17723218-17725674

CDS Start-stop positions

17723946-17724755

CDS Relative positions

251-1060

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:17684

Aliases

AI835299,
Cited2, ENSMUSG00000039910, ER154-like,
MGI:1306784, Mrg1, Msg2,
NCBI:17684, OFF:Cited2, p35srj

Chr 10

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
74734	78	CTG ...	LLQ ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, C2C12, MEF, Neutrophil, Testis
978082	156	AAG ...	KTS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
417647	102	ACG ...	TAR ...	Ribo-seq	ACG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14, MEF
521360	141	GTG ...	VAA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Spleen_B_cell
516652	36	CTG ...	LIS ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
578780	195	TTG ...	LQP ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14
838812	147	GTG ...	VRV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14
926494	177	ATT ...	ICS ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
1254368	48	AGG ...	RSC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
57540	75	CTG ...	LQD ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Testis
1018263	93	GTG ...	VAA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
923387	162	ACG ...	TGA ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
287711	90	CTG ...	LSR ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
426768	120	CTG ...	LPT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell
66886	90	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, R1E, Testis
76354	78	CTG ...	LDS ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
287760	96	GTG ...	VLL ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
911835	147	ACG ...	TAP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1653920	198	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	MEF
509408	54	GTG ...	VFR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
188985	45	ATG ...	MPR ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
290533	93	CTG ...	LLS ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
550828	249	TTG ...	LLA ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil
509925	153	CTG ...	LAV ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Spleen_B_cell
1258291	63	ATC ...	ITP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
925125	174	AGG ...	RQQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
910446	78	ATC ...	ITS ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
910378	30	ATT ...	ICT ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1653970	210	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
418386	246	TTG ...	LAA ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, C2C12, E14, MEF, Neutrophil
524367	66	GTG ...	VAA ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
1648643	195	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
926883	33	ATT ...	ISS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
287891	108	CTG ...	LSL ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5

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