Transcript 1258 | MetamORF

Transcript

ID CARD

MetamORF ID

1258

ENSMUST00000037099

Name

Clic4-201

Strand

Biotype

protein_coding

Start-end positions

135213969-135272814

CDS Start-stop positions

135217101-135272589

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:29876

Aliases

Clic4,
D0Jmb3, ENSMUSG00000037242, mc3s5,
MGI:1352754, mtCLIC, NCBI:29876,
OFF:Clic4, TU-74

Chr 4

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
898077	45	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
826010	72	CTG ...	LLT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF
900104	63	ACG ...	TRT ...	Ribo-seq	ACG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
896673	60	ATG ...	MPS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	BMDC, Glioma, Liver, MEF, MESC
58550	60	CTG ...	LRP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, E14, Liver, Spleen_B_cell
825675	48	ATG ...	MVK ...	Ribo-seq	ATG	strong	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1225955	33	ATT ...	IFH ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
163887	72	TTG ...	LPN ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
161288	87	CTG ...	LEW ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
900444	99	AGG ...	RRR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
58223	99	ATG ...	MST ...	Ribo-seq	ATG	weak	17	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, Testis, v6-5
900024	123	ACG ...	TSK ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
165930	60	CTG ...	LLT ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
822060	84	TTG ...	LPN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF
1233729	30	AAG ...	KKS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
163473	90	CTG ...	LLE ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
900283	51	ATA ...	IRL ...	Ribo-seq	ATA		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
900643	42	AGG ...	RNF ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
821908	99	CTG ...	LEW ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, NSC
897373	42	ATT ...	ISR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1684100	75	TTG ...	LCK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
899740	117	AAG ...	KPA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
898912	90	ATA ...	IRL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1257	48	CTG ...	LQI ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, R1E, Skin_tumor, Spleen_B_cell, v6-5
509066	102	CTG ...	LLE ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
898863	81	AGG ...	RNF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
60268	45	TTG ...	LRN ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
898198	48	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
896475	72	ACG ...	TKS ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF

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