Transcript 256494

Transcript

ID CARD

MetamORF ID

256494

ENSMUST00000035086

Name

Pdcd6ip-201

Strand

Biotype

protein_coding

Start-end positions

113651744-113708259

CDS Start-stop positions

113654933-113708107

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:18571

Aliases

AI480591,
Aip1, Alix, AW544830,
C76364, Eig2, ENSMUSG00000032504,
MGI:1333753, mKIAA1375, NCBI:18571,
OFF:Pdcd6ip, Pdcd6ip

Chr 9

ORFs

107 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1273224	33	TTG ...	LHG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
258948	60	TTG ...	LKM ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
924124	30	ATA ...	IKV ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1798229	69	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1274092	114	CTG ...	LTK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1074640	60	GTG ...	VRP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil
923557	57	CTG ...	LLE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
437591	171	CTG ...	LGA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil
618081	150	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
256695	54	ATG ...	MCL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, R1E, v6-5
1272799	81	AGG ...	RPM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
265137	54	CTG ...	LCL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC
924063	159	ATC ...	ITR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
922394	198	ACG ...	THM ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
1268451	126	ATC ...	ICS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
617458	225	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1110647	33	TTG ...	LIK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
620563	147	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1073817	36	CTG ...	LSL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil
264956	48	CTG ...	LET ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, v6-5
1073440	30	CTG ...	LRM ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil
266010	39	CTG ...	LYL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, v6-5
1332713	300	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
438430	219	CTG ...	LCG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF
1795752	63	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
261553	36	ATG ...	MWP ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, v6-5
1274063	42	AGG ...	RHP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
622179	99	GTG ...	VPL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
761606	141	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
924695	30	ATA ...	IKL ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
924747	33	CTG ...	LSC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, R1E
925466	117	ATC ...	ICL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
436516	87	GTG ...	VRP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil
621040	36	TTG ...	LNP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, v6-5
1524108	51	TTG ...	LLV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
1073445	39	TTG ...	LQQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil
271215	54	ATG ...	MTC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, v6-5
267288	45	TTG ...	LMK ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, v6-5
923020	246	ATA ...	IWP ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
620763	111	TTG ...	LPE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
624928	84	CTG ...	LST ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, v6-5
617095	153	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
622658	162	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
924979	108	AAG ...	KSR ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
617930	39	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
625279	114	CTG ...	LQS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, Neutrophil, NSC, v6-5
1273193	75	ATA ...	IMI ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
618389	78	CTG ...	LCL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC
619362	180	CTG ...	LQT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
621679	39	ATG ...	MKR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF, v6-5
621517	54	ATG ...	MIR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, v6-5
924974	279	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
925048	60	ATG ...	MIR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, R1E, v6-5
1111687	42	ATG ...	MKS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, R1E, v6-5
925624	174	ATG ...	MLS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, NSC
921943	117	ATC ...	ICL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1332467	57	ATG ...	MTV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
924141	180	ATA ...	ICR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
1075700	180	TTG ...	LAM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Neutrophil, NSC
268248	51	GTG ...	VFR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver
924294	30	AGG ...	REA ...	Ribo-seq	AGG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
626284	87	ATG ...	MLS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
625054	126	ATG ...	MYL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
924502	39	ATG ...	MLL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, NSC, v6-5
922601	51	ATG ...	MRR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
1275230	93	AGG ...	RPM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
617665	30	TTG ...	LGK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
924691	108	AAG ...	KSR ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
925390	195	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
615902	45	ATG ...	MQQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1110710	42	GTG ...	VPF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
1272350	33	ATC ...	IWI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
436581	231	CTG ...	LSL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF
437792	69	CTG ...	LPC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1113316	45	GTG ...	VVP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
620010	75	ATG ...	MLS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Neutrophil, v6-5
1110327	33	CTG ...	LCV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, v6-5
621864	156	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
922608	36	ATT ...	IQG ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1275379	198	ATC ...	IRL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1332679	294	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1073961	81	GTG ...	VVA ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, Neutrophil
619847	102	CTG ...	LQS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Neutrophil, v6-5
921647	45	ATC ...	IET ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
266749	33	CTG ...	LTW ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC
1273191	30	ATG ...	MKK ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E
619914	72	CTG ...	LST ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1074939	90	CTG ...	LQQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Neutrophil
622781	189	CTG ...	LCF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
256493	72	CTG ...	LCS ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC
1075224	30	CTG ...	LSW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil
616450	93	TTG ...	LRR ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC
435270	258	GTG ...	VPS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF
438456	264	CTG ...	LPV ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF
923818	33	CTG ...	LLD ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, v6-5
923853	72	ATG ...	MIL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
436777	42	CTG ...	LRS ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, Neutrophil, NSC, R1E
1075964	42	TTG ...	LGK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
1111899	78	CTG ...	LWT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1329198	54	TTG ...	LEL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
6274	36	TTG ...	LNR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E
921858	75	ATC ...	INR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1273527	30	ATA ...	ILK ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
624649	54	ATG ...	MLP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1116036	42	TTG ...	LNP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, R1E, v6-5
626951	120	CTG ...	LSA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
1076129	192	CTG ...	LRI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Neutrophil, v6-5

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