Transcript 5203 | MetamORF

Transcript

ID CARD

MetamORF ID

5203

ENSMUST00000034138

Name

Dnaja2-201

Strand

Biotype

protein_coding

Start-end positions

85537633-85555344

CDS Start-stop positions

85539216-85555247

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:56445

Aliases

1500017M13Rik,
2010206B19Rik, DNAJ, Dnaj3,
Dnaja2, DNJ3, ENSMUSG00000031701,
HIRIP4, mDj3, MGI:1931882,
NCBI:56445, OFF:Dnaja2, PRO3015

Chr 8

ORFs

81 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
237863	66	GTG ...	VLF ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
80001	78	CTG ...	LGK ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
918554	33	ATA ...	ITG ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
82186	36	TTG ...	LFF ...	Ribo-seq	TTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
79042	90	CTG ...	LPG ...	Ribo-seq	CTG	moderate	17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
5202	72	GTG ...	VED ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Skin_tumor, Spleen_B_cell
1260878	48	ATC ...	IFR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
431604	33	CTG ...	LIR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
5553	99	ATG ...	MDR ...	Ribo-seq	ATG		19	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
920932	36	ATA ...	ITG ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
79897	222	ATG ...	MLL ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, Testis
919431	36	ATC ...	IVI ...	Ribo-seq	ATC	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
245914	96	ATG ...	MQR ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell
239562	87	TTG ...	LSG ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell
79266	99	TTG ...	LRV ...	Ribo-seq	TTG	weak	16	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
239870	66	TTG ...	LLK ...	Ribo-seq	TTG	moderate	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1264113	33	AGG ...	RIV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
919685	60	AAG ...	KLY ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
246915	72	GTG ...	VFV ...	Ribo-seq	GTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
252777	63	ATG ...	MEK ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
1263553	72	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1265014	252	ATC ...	ISC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
427427	159	GTG ...	VVR ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, Neutrophil, NSC, Spleen_B_cell
246115	48	CTG ...	LFR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell
80056	216	TTG ...	LER ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
430130	105	GTG ...	VAW ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Spleen_B_cell
251442	84	TTG ...	LNQ ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
244000	54	GTG ...	VKE ...	Ribo-seq	GTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
919885	30	AAG ...	KKS ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
236197	63	TTG ...	LFE ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
917866	30	ATA ...	IRI ...	Ribo-seq	ATA		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
919716	135	ATG ...	MIA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
917636	231	AAG ...	KFL ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
236762	51	GTG ...	VDF ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
240513	54	TTG ...	LMY ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
253574	57	TTG ...	LMY ...	Ribo-seq	TTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1266666	93	AGG ...	RLQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
5601	189	ATG ...	MKY ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Skin_tumor, Spleen_B_cell
253881	108	CTG ...	LGK ...	Ribo-seq	CTG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
919606	66	ACG ...	TWP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
5482	75	TTG ...	LVE ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, Skin_tumor, Spleen_B_cell
5279	195	TTG ...	LHM ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Skin_tumor, Spleen_B_cell
236992	39	CTG ...	LRI ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
1267293	69	ATA ...	ILF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
918589	102	ATG ...	MDL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
5381	96	ATG ...	MIS ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Skin_tumor, Spleen_B_cell
237687	42	ATG ...	MKK ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, v6-5
240165	63	TTG ...	LKL ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
248966	63	GTG ...	VGS ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell
80928	45	CTG ...	LEI ...	Ribo-seq	CTG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
917580	204	AAG ...	KKW ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
81437	93	GTG ...	VLP ...	Ribo-seq	GTG	weak	17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
252276	75	CTG ...	LEI ...	Ribo-seq	CTG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1261365	42	AGG ...	RNG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1261413	30	AGG ...	RQR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
918447	189	AGG ...	RNL ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
1262511	63	AGG ...	RLQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
247502	54	CTG ...	LEL ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell
5240	153	ATG ...	MTD ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, Spleen_B_cell
1264268	201	AAG ...	KWS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
427264	165	CTG ...	LAV ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, Neutrophil, NSC, Spleen_B_cell
920226	45	ACG ...	TTS ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1691706	51	CTG ...	LDQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
81856	183	TTG ...	LIA ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
429243	144	ATG ...	MEN ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Spleen_B_cell
1262892	39	ATA ...	ILF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
978154	105	AGG ...	RHE ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
236011	51	ATG ...	MYS ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
431592	153	CTG ...	LRR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
253464	54	ATG ...	MYS ...	Ribo-seq	ATG		18	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
919859	255	AAG ...	KIS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
1263161	36	AAG ...	KTA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
252580	66	TTG ...	LFF ...	Ribo-seq	TTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
82436	129	ATG ...	MDR ...	Ribo-seq	ATG		20	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
920864	39	ATA ...	IRI ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
252525	42	CTG ...	LRI ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
5636	60	TTG ...	LAL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Skin_tumor, Spleen_B_cell
917770	126	CTG ...	LMK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
918547	180	ATA ...	IAL ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
613970	42	CTG ...	LIR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, v6-5
978198	72	AAG ...	KQT ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF

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