Transcript 7292 | MetamORF

Transcript

ID CARD

MetamORF ID

7292

ENSMUST00000033715

Name

Nsdhl-201

Strand

Biotype

protein_coding

Start-end positions

72918557-72958514

CDS Start-stop positions

72926336-72957614

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:18194

Aliases

AI747449,
Bpa, ENSMUSG00000031349, H105E3,
MGI:1099438, NCBI:18194, Nsdhl,
OFF:Nsdhl, Str, XAP104

Chr X

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
633741	30	TTG ...	LIT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
634850	42	TTG ...	LKP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, NSC, v6-5
1526111	45	ATG ...	MAF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
417863	39	GTG ...	VNQ ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, C2C12, E14, MEF, Spleen_B_cell, v6-5
1279101	42	ATC ...	IKA ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
629659	33	TTG ...	LSH ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, MEF, R1E, v6-5
631785	30	ATG ...	MPT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
443086	129	GTG ...	VKK ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Liver, R1E, Spleen_B_cell
442975	60	ATG ...	MGK ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
1335488	42	CTG ...	LDV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
629478	48	TTG ...	LIS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
633755	30	CTG ...	LST ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver
630414	153	CTG ...	LEH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, R1E
631013	66	GTG ...	VFS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF
441109	48	CTG ...	LFM ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Spleen_B_cell, v6-5
631404	87	GTG ...	VHS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, v6-5
629032	54	ATG ...	MYL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC
765180	30	TTG ...	LQT ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil
7291	51	TTG ...	LTI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF, Skin_tumor
629155	33	CTG ...	LQA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, v6-5
631119	120	TTG ...	LEA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
418206	78	GTG ...	VSK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, C2C12, E14, Liver, MEF, Spleen_B_cell, v6-5
629502	132	CTG ...	LDG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, v6-5
632289	111	CTG ...	LGS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1480958	72	ATG ...	MRP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
280551	30	ATG ...	MEL ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
631809	36	TTG ...	LPV ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, MEF, v6-5
443843	66	TTG ...	LEM ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell, v6-5
634848	60	TTG ...	LAP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, R1E, v6-5
440973	108	TTG ...	LGT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Spleen_B_cell
630059	51	TTG ...	LAP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, R1E
633337	60	CTG ...	LSM ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, R1E
632281	48	CTG ...	LVA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, v6-5
631585	33	GTG ...	VPV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
633386	42	ATG ...	MNQ ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, R1E
635540	48	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, NSC, v6-5
632807	33	TTG ...	LKP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, NSC
631707	39	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, R1E
441601	42	ATG ...	MVN ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
631913	51	GTG ...	VAG ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF
7525	78	TTG ...	LTI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF, Skin_tumor
282012	114	ATG ...	MKE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, Glioma, Liver, MEF, MESC

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