Transcript 7044 | MetamORF

Transcript

ID CARD

MetamORF ID

7044

ENSMUST00000033519

Name

Dynlt3-201

Strand

Biotype

protein_coding

Start-end positions

9654267-9663003

CDS Start-stop positions

9655987-9662898

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:67117

Aliases

2310075M16Rik,
AU042796, Dynlt3, ENSMUSG00000031176,
MGI:1914367, NCBI:67117, OFF:Dynlt3,
Tcte1l

Chr X

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
7501	171	GTG ...	VSF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	CDS sORF	Brain, Liver, Skin_tumor, Spleen_B_cell, Testis
276785	60	TTG ...	LLR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
284950	39	ATG ...	MRL ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
278599	33	TTG ...	LAS ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver
275766	81	CTG ...	LRT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain
7400	75	ATG ...	MDC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
7378	36	ATG ...	MRI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, C2C12
276163	63	ATG ...	MEF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
7529	84	ATG ...	MDF ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, Skin_tumor, Spleen_B_cell
926079	105	AGG ...	RGT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
88811	36	ATG ...	MFL ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, Testis
286531	162	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Brain
926407	153	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
285789	108	GTG ...	VQW ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, NSC, Spleen_B_cell
285322	108	CTG ...	LDR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, BMDC, Brain, MEF, NSC
287283	156	CTG ...	LEW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, Brain
284165	66	ATG ...	MDF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC
7043	93	ATG ...	MGE ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC, Skin_tumor
7297	72	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain
7157	105	CTG ...	LYH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC, Skin_tumor
7457	156	GTG ...	VTC ...	Ribo-seq	GTG		9	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Brain, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
279469	90	GTG ...	VQW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
88758	30	TTG ...	LQL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, Testis
281878	72	CTG ...	LHR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
927852	60	AGG ...	RGT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

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