Transcript 170510

Transcript

ID CARD

MetamORF ID

170510

ENSMUST00000031607

Name

Dtx1-201

Strand

Biotype

protein_coding

Start-end positions

120680202-120711927

CDS Start-stop positions

120681248-120710313

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:14357

Aliases

Dtx1,
ENSMUSG00000029603, Fxit1, MGI:1352744,
mKIAA4160, NCBI:14357, OFF:Dtx1

Chr 5

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
170509	93	GTG ...	VLP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
1088872	30	ATG ...	MWF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
519662	186	GTG ...	VQG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
523828	156	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
523928	93	CTG ...	LNI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
184130	60	CTG ...	LES ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, Spleen_B_cell
1089075	36	CTG ...	LRM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
185101	63	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
177979	57	GTG ...	VGT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
524348	258	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
524111	150	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
519750	63	GTG ...	VTR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
178583	33	GTG ...	VKR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, Spleen_B_cell
1240059	78	AGG ...	RED ...	Ribo-seq	AGG	optimal	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
521199	90	CTG ...	LNI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
831381	48	GTG ...	VAD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
524887	270	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
520131	273	CTG ...	LQV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
175995	33	ATG ...	MAT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, Glioma, Liver, MEF, MESC
518075	72	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
829367	69	CTG ...	LGQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
828587	99	CTG ...	LSI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
518413	147	GTG ...	VCS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
517745	57	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell

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