Transcript 1253 | MetamORF

Transcript

ID CARD

MetamORF ID

1253

ENSMUST00000030839

Name

Ctnnbip1-201

Strand

Biotype

protein_coding

Start-end positions

149518236-149566437

CDS Start-stop positions

149545736-149564263

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:67087

Aliases

1110008O09Rik,
2310001I19Rik, AW457332, Catnbip1,
Ctnnbip1, ENSMUSG00000028988, Icat,
MGI:1915756, NCBI:67087, OFF:Ctnnbip1

Chr 4

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
165659	153	GTG ...	VNF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, C2C12, E14, MEF
160533	51	TTG ...	LSI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF, R1E
1252	30	GTG ...	VNF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, C2C12, E14, Skin_tumor
899227	45	ATC ...	ICL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
148289	57	TTG ...	LLF ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14
165176	174	TTG ...	LSI ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, MEF, R1E
163228	162	TTG ...	LPE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, MEF
157495	39	TTG ...	LPE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, R1E
901058	168	ATC ...	ICL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
413771	30	ATT ...	ISS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12

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