Transcript 154920

Transcript

ID CARD

MetamORF ID

154920

ENSMUST00000030757

Name

Fbxo42-201

Strand

Biotype

protein_coding

Start-end positions

141147913-141204062

CDS Start-stop positions

141167728-141200564

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:213499

Aliases

6720460I06Rik,
ENSMUSG00000028920, Fbxo42, MGI:1924992,
mKIAA1332, NCBI:213499, OFF:Fbxo42

Chr 4

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1227340	99	CTG ...	LRQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1885166	36	GTG ...	VKI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1657387	33	TTG ...	LEG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1884829	66	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1081893	30	GTG ...	VCH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
159571	180	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
552668	84	ATG ...	MMP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
513183	84	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
546080	33	CTG ...	LLP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF
1379255	39	TTG ...	LGL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
511240	30	ATG ...	MVE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
150802	240	ATG ...	MTV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
551279	36	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1230855	195	CTG ...	LGN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
552686	54	GTG ...	VAV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
151355	246	GTG ...	VKM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
1887315	57	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
824181	81	GTG ...	VEE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1227326	126	GTG ...	VFT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
156042	207	CTG ...	LHW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
510353	72	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
151458	270	GTG ...	VSW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF
513380	39	ATG ...	MAA ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	sORF Upstream	B_cell, Brain, Glioma, Liver, MEF, MESC, R1E
823694	81	ATG ...	MPI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1176125	36	CTG ...	LQT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
549070	57	TTG ...	LVA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
1884836	78	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
154919	234	GTG ...	VSW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E
551694	63	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1889179	48	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
824551	99	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell

Export data