Transcript 55842 | MetamORF

Transcript

ID CARD

MetamORF ID

55842

ENSMUST00000030724

Name

Sesn2-201

Strand

Biotype

protein_coding

Start-end positions

132492032-132510501

CDS Start-stop positions

132493716-132510153

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:230784

Aliases

ENSMUSG00000028893,
HI95, MGI:2651874, NCBI:230784,
OFF:Sesn2, Ses2, Sesn2,
SEST2

Chr 4

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
828114	87	ATG ...	MKT ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
57879	66	GTG ...	VRS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, E14, R1E, Spleen_B_cell, Testis
1230024	273	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1227908	87	AGG ...	RRA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
58844	69	ATG ...	MVR ...	Ribo-seq	ATG	strong	9	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis
148060	105	CTG ...	LGM ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
1379573	36	GTG ...	VSK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
166233	39	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF
556466	252	TTG ...	LSG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	3T3
1226459	45	ACG ...	TEP ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
161080	93	ATG ...	MSV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
1082474	93	CTG ...	LVP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
150547	99	ATG ...	MGM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
825919	69	GTG ...	VKT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
826768	99	GTG ...	VFP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1380358	63	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
828094	111	TTG ...	LWR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
555209	276	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	3T3
1176966	48	CTG ...	LPL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
556128	90	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
1231772	84	AAG ...	KTS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
827818	93	TTG ...	LDM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1377002	78	ATG ...	MQR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
164214	96	GTG ...	VAW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14
157715	108	ATG ...	MLG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
158636	87	GTG ...	VAP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
1226289	33	TTG ...	LSW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
55841	78	GTG ...	VVG ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, R1E, Spleen_B_cell, Testis
1231032	180	GTG ...	VPF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
56672	75	GTG ...	VGM ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, R1E, Spleen_B_cell, Testis
1230397	39	CTG ...	LRE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
148825	123	ATG ...	MSI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Brain, Glioma, Liver, MEF, MESC
557136	72	CTG ...	LRR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, v6-5
513608	39	CTG ...	LRA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
1229947	129	ATA ...	ITP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
825082	96	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1228321	57	AAG ...	KPA ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1233835	186	ATT ...	IPR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
827645	147	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
824863	174	CTG ...	LTE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
546403	33	ATG ...	MLC ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, v6-5
56635	30	ATG ...	MPC ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Testis
1225312	54	AGG ...	RRK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
827274	150	GTG ...	VVW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1230704	39	ACG ...	THE ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1231671	69	ATT ...	IPR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
827650	42	GTG ...	VPR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
59500	60	TTG ...	LKP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Testis
824303	45	CTG ...	LGR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
57578	66	CTG ...	LRR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Testis, v6-5
822284	186	CTG ...	LAT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell

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