Transcript 1412 | MetamORF

Transcript

ID CARD

MetamORF ID

1412

ENSMUST00000030538

Name

Ddost-201

Strand

Biotype

protein_coding

Start-end positions

138304730-138312628

CDS Start-stop positions

138304879-138311983

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:13200

Aliases

Ddost,
ENSMUSG00000028757, MGI:1194508, NCBI:13200,
OFF:Ddost

Chr 4

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
158606	48	CTG ...	LSS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, v6-5
152224	195	GTG ...	VPR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell
1588	81	CTG ...	LSS ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
153912	39	ATG ...	MVY ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
160671	78	GTG ...	VAS ...	Ribo-seq	GTG	strong	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
148803	84	GTG ...	VSV ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1411	99	TTG ...	LMK ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
61203	141	GTG ...	VTL ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
158027	48	CTG ...	LTC ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
146033	66	TTG ...	LMK ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1553867	195	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
166069	141	CTG ...	LAP ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
161949	99	CTG ...	LRQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell
146634	96	CTG ...	LRL ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
145819	54	ATG ...	MSA ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC
897236	171	ATG ...	MTP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
61029	45	ATG ...	MPT ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Testis
898990	108	ATC ...	IPA ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
155722	132	CTG ...	LAP ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
510734	57	ATG ...	MVA ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, NSC, Spleen_B_cell
900544	90	ATT ...	ISS ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
164633	117	GTG ...	VSV ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
145673	51	TTG ...	LMV ...	Ribo-seq	TTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
153788	174	CTG ...	LLG ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
510164	60	TTG ...	LMV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, Spleen_B_cell
60853	144	TTG ...	LPG ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
161211	105	TTG ...	LNL ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
59885	78	ATG ...	MPS ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis, v6-5
1732725	33	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
154024	99	TTG ...	LEA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell
60823	102	GTG ...	VAL ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
150882	69	ATG ...	MAS ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
151869	123	CTG ...	LRA ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
146410	78	GTG ...	VGL ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
157480	108	GTG ...	VTL ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
163143	105	CTG ...	LRL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell
162691	111	GTG ...	VGL ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
159032	69	GTG ...	VPS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell
166179	132	CTG ...	LRA ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
60531	84	CTG ...	LCP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
59060	51	CTG ...	LWP ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell, Testis, v6-5
60943	39	GTG ...	VRR ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
149835	66	GTG ...	VSS ...	Ribo-seq	GTG	moderate	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
146957	45	GTG ...	VMT ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell, v6-5
898359	54	GTG ...	VAA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC
150738	90	CTG ...	LRQ ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
150023	48	ATG ...	MVM ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
897367	45	ACG ...	TCM ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
158870	72	TTG ...	LNL ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
160250	42	ATG ...	MTF ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, Neutrophil, Spleen_B_cell, v6-5
56530	69	CTG ...	LCP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, Testis
148857	63	ATG ...	MKR ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1509989	159	CTG ...	LGV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1231803	51	AGG ...	RPH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
552772	30	ATG ...	MPT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Neutrophil, NSC
508905	36	GTG ...	VYS ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, NSC, Spleen_B_cell, v6-5
1232840	132	AGG ...	RPG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1225026	84	ACG ...	TWR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1233740	120	ACG ...	TPG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
154870	234	CTG ...	LRA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, Spleen_B_cell
1437	96	ATG ...	MKR ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1228242	36	AGG ...	RLF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
158332	171	CTG ...	LGD ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
165945	48	TTG ...	LEW ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5

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