Transcript 1390 | MetamORF

Transcript

ID CARD

MetamORF ID

1390

ENSMUST00000030457

Name

Nasp-202

Strand

Biotype

protein_coding

Start-end positions

116601052-116627497

CDS Start-stop positions

116601716-116627390

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:50927

Aliases

5033430J04Rik,
AI131596, AI317140, D4Ertd767e,
ENSMUSG00000028693, Epcs32, MGI:1355328,
Nasp, Nasp-T, NCBI:50927,
OFF:Nasp

Chr 4

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
59042	102	TTG ...	LPK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
555971	36	TTG ...	LKR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1231977	129	AAG ...	KFQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
512095	111	CTG ...	LVF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
61232	51	GTG ...	VTF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
515105	165	ATG ...	MEA ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, R1E, Spleen_B_cell, v6-5
61014	99	TTG ...	LII ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1782882	33	ATG ...	MQR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1782144	36	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
557261	75	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
514430	147	CTG ...	LSP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, R1E, Spleen_B_cell, v6-5
55991	60	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1362	108	CTG ...	LKA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil
516113	156	GTG ...	VGM ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, R1E, Spleen_B_cell, v6-5
555610	36	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
884	81	CTG ...	LKA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
554834	87	TTG ...	LKM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1389	114	ATG ...	MKL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, Skin_tumor, v6-5
511610	48	TTG ...	LPV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
555513	81	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
513067	51	ATG ...	MTR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
515142	138	GTG ...	VER ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, E14, R1E, Spleen_B_cell, v6-5
514389	150	ATG ...	MLS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, E14, R1E, Spleen_B_cell, v6-5
511708	33	ATG ...	MVT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC
515175	78	ATG ...	MTR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
558758	57	TTG ...	LAN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, Neutrophil
558016	42	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
556018	96	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
516064	69	CTG ...	LKK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF

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