Transcript 146621

Transcript

ID CARD

MetamORF ID

146621

ENSMUST00000030284

Name

Rnf11-201

Strand

Biotype

protein_coding

Start-end positions

109451098-109476675

CDS Start-stop positions

109454251-109476232

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:29864

Aliases

ENSMUSG00000028557,
MGI:1352759, NCBI:29864, OFF:Rnf11,
Rnf11

Chr 4

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
166425	144	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
150312	48	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
154108	231	TTG ...	LDP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Brain
162537	48	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
160145	252	CTG ...	LRQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
147342	63	TTG ...	LFM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
151204	75	ATG ...	MHK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
148282	96	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
151485	36	GTG ...	VHA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
152555	81	CTG ...	LYD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
155261	39	TTG ...	LEM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
160131	42	CTG ...	LFP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
164011	33	ATG ...	MDQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
147617	57	ATG ...	MGT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
150247	48	ATG ...	MSG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
164495	42	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
149491	33	ATG ...	MDQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
614	90	GTG ...	VCD ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
147257	240	CTG ...	LRQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
160659	252	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Brain
164717	99	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
153509	42	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
155333	33	ATG ...	MEF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain
158099	39	CTG ...	LRC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
146620	105	ATG ...	MRP ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	sORF Upstream	Brain, E14, Liver, MEF, Spleen_B_cell
156303	54	ATG ...	MQH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain

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