Transcript 515888

Transcript

ID CARD

MetamORF ID

515888

ENSMUST00000030076

Name

Ptbp3-201

Strand

Biotype

protein_coding

Start-end positions

59471868-59549364

CDS Start-stop positions

59476883-59524425

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:230257

Aliases

5830471K22Rik,
AA407443, AI462022, AW107884,
C86549, ENSMUSG00000028382, MGI:1923334,
NCBI:230257, OFF:Ptbp3, Ptbp3,
Rod1

Chr 4

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
154541	48	CTG ...	LMS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
679	30	CTG ...	LVS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
513011	60	GTG ...	VFS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
152258	30	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
157802	45	ATG ...	MSF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
147846	114	ATG ...	MGM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
515891	126	GTG ...	VCM ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Neutrophil, R1E, Spleen_B_cell, v6-5
826740	222	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Neutrophil
510569	108	ATG ...	MTT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
155627	33	GTG ...	VMS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
515887	180	CTG ...	LTG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
556768	132	CTG ...	LQV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
900899	84	ACG ...	TRS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC

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