Transcript 1181 | MetamORF

Transcript

ID CARD

MetamORF ID

1181

ENSMUST00000030051

Name

Txn1-201

Strand

Biotype

protein_coding

Start-end positions

57943373-57956411

CDS Start-stop positions

57943905-57956210

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:22166

Aliases

ADF,
AW550880, ENSMUSG00000028367, MGI:98874,
NCBI:22166, OFF:Txn1, Trx1,
Txn, Txn1

Chr 4

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1684403	66	GTG ...	VVW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
897726	78	AGG ...	RRP ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
900947	90	AGG ...	RKL ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
896916	63	GTG ...	VWT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF
827892	207	TTG ...	LFE ...	Ribo-seq	TTG		10	sORFs_org_Mouse	CDS sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC
414075	87	AAG ...	KLF ...	Ribo-seq	AAG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
57960	90	TTG ...	LQA ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
900780	246	ATA ...	IKR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, MEF
1658643	288	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
983918	30	CTG ...	LLR ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Neutrophil
414224	75	AGG ...	RPW ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14
1657646	294	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
60369	300	CTG ...	LQE ...	Ribo-seq	CTG		15	sORFs_org_Mouse	CDS sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
1657926	291	TTG ...	LLQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
56009	69	TTG ...	LDP ...	Ribo-seq	TTG	strong	18	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
901202	297	AGG ...	RML ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
60135	138	GTG ...	VFL ...	Ribo-seq	GTG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
897441	42	GTG ...	VWR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Downstream sORF	BMDC, MEF, v6-5
1180	48	TTG ...	LSW ...	Ribo-seq	TTG	moderate	20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1684973	30	GTG ...	VES ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
58416	33	GTG ...	VAP ...	Ribo-seq	GTG	moderate	14	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1658070	279	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1656754	213	GTG ...	VLT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
897815	99	TTG ...	LKW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF
896367	117	ATT ...	IPM ...	Ribo-seq	ATT		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF
898692	192	AAG ...	KPL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
977250	195	TTG ...	LKP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1060613	261	TTG ...	LKT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	CDS sORF	MEF, Neutrophil, NSC
58823	78	TTG ...	LGA ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
898611	180	CTG ...	LNM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
977216	126	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
899337	96	ATG ...	MKC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC

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