Transcript 53408 | MetamORF

Transcript

ID CARD

MetamORF ID

53408

ENSMUST00000029770

Name

Abcd3-201

Strand

Biotype

protein_coding

Start-end positions

121758907-121815302

CDS Start-stop positions

121760232-121815118

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:19299

Aliases

Abcd3,
AI313901, AU018866, AW146054,
ENSMUSG00000028127, MGI:1349216, NCBI:19299,
OFF:Abcd3, PMP68, PMP70,
Pxmp1

Chr 3

ORFs

68 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
143411	114	ATG ...	MAD ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
1221067	60	AAG ...	KSY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
866820	138	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
865628	39	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
867257	69	TTG ...	LIA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
143869	105	ATG ...	MNV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
138965	66	TTG ...	LVA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
895409	105	ATA ...	IIS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
143569	87	TTG ...	LVS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
138904	54	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
866795	132	TTG ...	LFP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC
864911	54	ATG ...	MGI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
543155	186	CTG ...	LFC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, NSC
894584	33	AGG ...	RTT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
983173	51	TTG ...	LWS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
867128	189	GTG ...	VKK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC
141756	105	ATG ...	MSS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
1425117	36	CTG ...	LWK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
144905	249	TTG ...	LPF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver
865583	66	TTG ...	LPF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
142180	96	GTG ...	VEN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
138008	66	ATG ...	MNA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
866073	36	CTG ...	LRE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1223131	90	ATA ...	INP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
867112	180	TTG ...	LPF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC
867209	168	ATG ...	MGI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC
1424168	36	GTG ...	VLE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
504828	30	GTG ...	VPW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
142135	129	GTG ...	VVQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
141826	237	ATG ...	MNA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver
865913	45	TTG ...	LPL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
144886	216	GTG ...	VWM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver
1425241	57	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Liver
1425207	102	ATG ...	MGE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Liver
1223360	120	ACG ...	TAV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
134310	33	GTG ...	VEN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
541797	45	CTG ...	LRE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
867314	66	TTG ...	LEG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
536401	75	TTG ...	LSP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
747241	45	TTG ...	LRL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
747507	30	TTG ...	LDD ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1424370	33	CTG ...	LEK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
141734	93	GTG ...	VFL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
749084	81	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
144714	174	TTG ...	LAS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver
141868	96	GTG ...	VAS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
142800	225	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver
866196	45	CTG ...	LWW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
143761	84	GTG ...	VSY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver
1423471	39	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
141336	114	GTG ...	VER ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
133245	78	TTG ...	LPF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
895565	66	ATA ...	IAS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
129682	45	GTG ...	VWM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
983856	90	TTG ...	LQW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
542101	87	TTG ...	LVA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
506613	36	CTG ...	LPV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
135348	39	ATG ...	MWR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
540469	69	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
865200	57	TTG ...	LEG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
53407	69	TTG ...	LKE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Testis
1223930	63	AAG ...	KSY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1424144	87	ATG ...	MNS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Liver
867025	222	TTG ...	LTL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC
142858	210	ATG ...	MWR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver
864866	48	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
983891	30	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
542531	111	ATG ...	MWW ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver

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