Transcript 49835 | MetamORF

Transcript

ID CARD

MetamORF ID

49835

ENSMUST00000029171

Name

Rpn2-201

Strand

Biotype

protein_coding

Start-end positions

157279146-157326319

CDS Start-stop positions

157279323-157325723

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:20014

Aliases

1300012C06Rik,
AV261018, ENSMUSG00000027642, MGI:98085,
NCBI:20014, OFF:Rpn2, Rpn-2,
Rpn2

Chr 2

ORFs

76 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1368157	36	ATG ...	MFC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1367834	36	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
860783	36	TTG ...	LKV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
120595	72	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
50162	171	ATG ...	MCV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative CDS sORF	B_cell, Brain, NSC, Testis
50693	186	CTG ...	LVW ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative CDS sORF	B_cell, Brain, MEF, R1E, Testis
124611	144	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
966489	87	ACG ...	TWL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
45896	36	GTG ...	VGP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, R1E
49834	156	TTG ...	LSV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative CDS sORF	Brain, Testis
965615	135	ATA ...	ITR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
731976	99	ATG ...	MQL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
115346	129	GTG ...	VKT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
44095	69	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, NSC, v6-5
15621	99	CTG ...	LSQ ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
971859	75	AAG ...	KLA ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
50973	267	CTG ...	LVA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative CDS sORF	R1E, Testis, v6-5
45953	78	ATG ...	MLS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
966172	75	ATC ...	IFP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
101209	147	TTG ...	LFD ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
94033	129	TTG ...	LSP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, v6-5
738057	105	TTG ...	LLL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
861286	51	TTG ...	LLP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
860885	48	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
98743	93	TTG ...	LAS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
102359	93	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, v6-5
106048	78	TTG ...	LIF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
861783	54	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil
971092	78	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
16132	81	ATG ...	MYI ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
113447	96	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, v6-5
44669	54	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, R1E
100707	99	CTG ...	LKL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
15989	54	CTG ...	LKG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
966201	63	AGG ...	RKP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
964028	90	ATA ...	ITR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
102454	84	TTG ...	LRK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, v6-5
50190	264	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative CDS sORF	R1E, Testis, v6-5
122002	78	CTG ...	LKL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E
50586	297	CTG ...	LKR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative CDS sORF	Brain, R1E, Testis, v6-5
1215758	153	AGA ...	RRL ...	Ribo-seq	AGA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
95834	63	GTG ...	VAT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Neutrophil, NSC, v6-5
746821	45	CTG ...	LWI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC
109830	81	ATG ...	MLI ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC
116050	99	GTG ...	VCI ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, v6-5
99737	48	TTG ...	LCP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, v6-5
494180	78	ATG ...	MLN ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, v6-5
47164	153	CTG ...	LTF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, R1E
860645	45	CTG ...	LSE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	NSC, v6-5
15683	102	TTG ...	LLS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
744885	60	ATG ...	MLI ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC
1170520	33	TTG ...	LRT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
48708	63	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
93847	90	CTG ...	LLH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, v6-5
97149	87	CTG ...	LHC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, v6-5
968788	114	AAG ...	KWC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
51090	225	TTG ...	LCC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative CDS sORF	Brain, MEF, R1E, Testis, v6-5
44577	48	CTG ...	LCC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC
967490	66	ATA ...	IST ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
16319	174	GTG ...	VRS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, NSC, R1E, v6-5
107711	123	CTG ...	LAR ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
15030	42	TTG ...	LNL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
45186	123	GTG ...	VAC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
964303	96	AAG ...	KLA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
50919	285	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative CDS sORF	Brain, R1E, Testis, v6-5
50875	198	TTG ...	LTG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative CDS sORF	B_cell, Brain, MEF, R1E, Testis
51458	216	CTG ...	LEK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative CDS sORF	Brain, MEF, R1E, Testis
48975	84	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
15908	69	TTG ...	LNW ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
49446	90	CTG ...	LTW ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, NSC, v6-5
120438	105	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC, R1E
111018	105	GTG ...	VWP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
15519	54	ATG ...	MTS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, NSC, v6-5
102129	66	CTG ...	LWI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC
1215556	30	AGG ...	RTL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
743162	57	TTG ...	LIF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC

Export data