Transcript 96840 | MetamORF

Transcript

ID CARD

MetamORF ID

96840

ENSMUST00000028763

Name

Tyro3-201

Strand

Biotype

protein_coding

Start-end positions

119799514-119818104

CDS Start-stop positions

119799790-119817034

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:22174

Aliases

AI323366,
Brt, Dtk, ENSMUSG00000027298,
Etk-2, etk2/tyro3, MGI:104294,
NCBI:22174, OFF:Tyro3, Rse,
Sky, Tif, tk19-1,
TK19-2, Tyro3

Chr 2

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
104636	36	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
126138	165	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
103709	81	ATG ...	MNQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
102257	30	ATG ...	MVR ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Overlapping sORF Upstream	Glioma, Liver, MEF, MESC
123119	147	CTG ...	LCQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
118136	42	CTG ...	LDW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1502665	57	ATG ...	MLA ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
116836	48	ATG ...	MPF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
111963	69	CTG ...	LCQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
96839	72	GTG ...	VGR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
119414	99	CTG ...	LWH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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