Transcript 37292 | MetamORF

Transcript

ID CARD

MetamORF ID

37292

ENSMUST00000027810

Name

Fh1-201

Strand

Biotype

protein_coding

Start-end positions

175600374-175625635

CDS Start-stop positions

175601424-175625573

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:14194

Aliases

ENSMUSG00000026526,
Fh, Fh-1, Fh1,
MGI:95530, NCBI:14194, OFF:Fh1

Chr 1

ORFs

71 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
297995	150	CTG ...	LLQ ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
112751	54	TTG ...	LAA ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
119210	135	ATG ...	MLS ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1189507	75	AAG ...	KSL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
132929	276	TTG ...	LAA ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
161226	36	TTG ...	LPR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver
1208730	114	AAG ...	KSL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
132296	108	TTG ...	LRR ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
109388	90	TTG ...	LGE ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
312872	69	TTG ...	LRR ...	Ribo-seq	TTG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
317341	87	GTG ...	VQN ...	Ribo-seq	GTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
770869	45	TTG ...	LNL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC, v6-5
148215	138	ATG ...	MML ...	Ribo-seq	ATG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
384663	66	CTG ...	LPR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
246517	45	TTG ...	LAD ...	Ribo-seq	TTG	strong	11	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
1206550	48	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
348862	30	TTG ...	LEV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
448881	33	CTG ...	LLE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, Spleen_B_cell
309359	147	CTG ...	LQW ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
139328	282	GTG ...	VNL ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
353091	54	CTG ...	LCG ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
298901	99	ATG ...	MML ...	Ribo-seq	ATG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
48264	84	CTG ...	LQC ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, Spleen_B_cell, Testis
142961	192	TTG ...	LLL ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
328593	72	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, NSC
756017	39	TTG ...	LAI ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC, v6-5
434212	54	CTG ...	LGK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell
301288	102	ATG ...	MCC ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, NSC, v6-5
97507	45	GTG ...	VWS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC
1622710	30	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
452689	30	CTG ...	LEA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell
468177	39	CTG ...	LLP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, v6-5
453963	51	ATG ...	MIF ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell
499588	75	CTG ...	LGK ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, Spleen_B_cell
1751271	30	ATG ...	MLW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
365417	57	ATG ...	MIT ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, v6-5
445640	180	ATG ...	MTP ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
324001	36	GTG ...	VVT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, R1E, v6-5
1208236	69	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1345402	30	TTG ...	LEA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
736896	42	CTG ...	LKT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, NSC
1868366	252	ATG ...	MFL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
152226	57	TTG ...	LEV ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, v6-5
39680	63	CTG ...	LQC ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, Spleen_B_cell
1245082	42	ACG ...	TSS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
37291	51	TTG ...	LGE ...	Ribo-seq	TTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
485824	42	TTG ...	LLL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
376232	30	ATG ...	MLS ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, v6-5
26193	66	GTG ...	VLQ ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, Spleen_B_cell
53846	87	GTG ...	VLQ ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis
1716813	33	ATG ...	MML ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
142277	261	CTG ...	LCT ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
882421	39	CTG ...	LLM ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, v6-5
1202656	171	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
168472	153	TTG ...	LLL ...	Ribo-seq	TTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1878077	243	TTG ...	LKI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
320514	51	TTG ...	LKL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, NSC, v6-5
337389	69	TTG ...	LQP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1203374	147	AGG ...	RHC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
315349	39	CTG ...	LCT ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
141425	219	ATG ...	MTP ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
350180	72	TTG ...	LSL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
144147	126	GTG ...	VQN ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
150800	186	CTG ...	LQW ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1050537	36	ATG ...	MKS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
153359	69	ATG ...	MLS ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, v6-5
113335	189	CTG ...	LLQ ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
367104	96	ATG ...	MLS ...	Ribo-seq	ATG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
347083	33	ATG ...	MVS ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell, v6-5
171798	60	GTG ...	VNL ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
100386	54	ATG ...	MTK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver

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