Transcript 151713

Transcript

ID CARD

MetamORF ID

151713

ENSMUST00000027743

Name

Stx6-201

Strand

Biotype

protein_coding

Start-end positions

155158715-155205659

CDS Start-stop positions

155158893-155202016

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:58244

Aliases

2310039E05Rik,
2410005I16Rik, AA437559, AI415714,
AI845861, ENSMUSG00000026470, MGI:1926235,
NCBI:58244, OFF:Stx6, Stx6

Chr 1

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
643473	45	TTG ...	LKQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
934891	57	ATC ...	IRC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
151712	198	CTG ...	LPW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain
478829	156	CTG ...	LTD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Spleen_B_cell
463958	81	CTG ...	LDR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell
12387	117	ATG ...	MDR ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, v6-5
533872	129	GTG ...	VGA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
445811	117	TTG ...	LEW ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
537417	45	CTG ...	LCR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
35196	66	CTG ...	LDH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell, v6-5
474042	84	CTG ...	LLD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell
101753	51	ATG ...	MIS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
337259	93	CTG ...	LPK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
343773	45	CTG ...	LQQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
358538	39	CTG ...	LCR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
970814	63	ATC ...	IRC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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