Transcript 37009 | MetamORF

Transcript

ID CARD

MetamORF ID

37009

ENSMUST00000027623

Name

Tsn-201

Strand

Biotype

protein_coding

Start-end positions

118294778-118311416

CDS Start-stop positions

118300804-118311066

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:22099

Aliases

2610034C24Rik,
AU040286, C3PO, ENSMUSG00000026374,
MGI:109263, NCBI:22099, OFF:Tsn,
TB-RBP, Tsn

Chr 1

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
40610	96	GTG ...	VDA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, R1E
774707	147	GTG ...	VRR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
22627	42	TTG ...	LWV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, R1E
37008	171	TTG ...	LRR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Testis
17441	111	TTG ...	LAQ ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, R1E
18140	33	TTG ...	LWY ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E, Spleen_B_cell
401358	42	TTG ...	LFV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, R1E
1225854	39	AGG ...	RVL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1595531	39	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
790253	33	CTG ...	LIV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
25862	81	CTG ...	LLE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, R1E
103226	75	GTG ...	VLE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, R1E
414090	30	AGG ...	RKY ...	Ribo-seq	AGG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
125470	33	CTG ...	LDF ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
357145	30	ATG ...	MWK ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
47285	51	CTG ...	LPS ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
23763	78	CTG ...	LET ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, R1E
31753	96	CTG ...	LST ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, R1E
1275615	87	AGG ...	RVL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
26473	87	GTG ...	VSL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, R1E
258505	36	GTG ...	VGR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain
46886	84	CTG ...	LLQ ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
763516	132	GTG ...	VWE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
898762	63	AGG ...	RAF ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1290185	150	ATA ...	IRR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1202650	174	ATG ...	MTF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	E14, Glioma, Liver, MEF, MESC
22888	36	ATG ...	MSW ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E
27515	81	ATG ...	MSI ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E
100046	63	TTG ...	LNQ ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
703106	192	GTG ...	VRA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1199890	81	CTG ...	LDF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
91269	108	TTG ...	LAV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, R1E
18558	84	GTG ...	VAT ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, R1E
43633	108	TTG ...	LAV ...	Ribo-seq	TTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Testis, v6-5
1210361	75	ATT ...	IGG ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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