Transcript 140 | MetamORF

Transcript

ID CARD

MetamORF ID

140

ENSMUST00000027421

Name

Trip12-201

Strand

Biotype

protein_coding

Start-end positions

84721189-84839304

CDS Start-stop positions

84724618-84814920

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:14897

Aliases

1110036I07Rik,
6720416K24Rik, AA410158, ENSMUSG00000026219,
Gtl6, MGI:1309481, NCBI:14897,
OFF:Trip12, TRIP-12, Trip12

Chr 1

ORFs

123 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
312413	63	ATG ...	MHL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
537513	42	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
809855	66	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
725475	81	CTG ...	LQR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
805688	105	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
1137502	78	TTG ...	LIL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
136391	126	TTG ...	LTH ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
308980	39	ATG ...	MKI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
14606	78	GTG ...	VQY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
466622	42	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
806405	54	CTG ...	LGR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, v6-5
811246	30	CTG ...	LRW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
137324	105	GTG ...	VYR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell
787921	45	TTG ...	LPS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, MEF
297437	39	CTG ...	LGC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
298239	81	ATG ...	MFS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
496049	147	ATG ...	MKV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
1173642	108	ATG ...	MVQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1876181	153	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
785776	57	TTG ...	LSL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1170964	279	TTG ...	LVN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
446611	54	CTG ...	LIW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
488677	36	CTG ...	LIM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
300315	84	GTG ...	VMF ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
147182	36	ATG ...	MIL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF
1155731	54	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
450118	60	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
466697	42	ATG ...	MMK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
1717292	39	TTG ...	LDK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
11297	81	ATG ...	MVQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
815781	129	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
646772	126	ATG ...	MGQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
478413	216	GTG ...	VWL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
498305	51	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1171878	147	TTG ...	LNT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
575395	66	ATG ...	MGK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
1167781	105	GTG ...	VQY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
807882	174	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1679960	75	ATG ...	MSF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
470993	30	GTG ...	VMM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
733082	90	ATG ...	MKE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E
1144584	72	GTG ...	VPP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
618677	45	CTG ...	LCK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
1143202	75	GTG ...	VMK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1460913	30	ATG ...	MAI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
716929	57	CTG ...	LRP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
1346388	33	CTG ...	LKI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
492300	105	TTG ...	LNR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
1701283	54	TTG ...	LLS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
761355	33	CTG ...	LPG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
139	39	TTG ...	LRD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
468188	75	TTG ...	LTH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
181375	48	GTG ...	VFQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
445519	162	GTG ...	VLK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1718456	51	TTG ...	LSV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
450836	57	GTG ...	VSR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
545193	66	ATG ...	MIS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
687817	81	CTG ...	LAW ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
621202	39	TTG ...	LIM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1128008	36	TTG ...	LFC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1130737	84	TTG ...	LQP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
702615	96	ATG ...	MHR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1158836	63	ATG ...	MEV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
746444	66	TTG ...	LIP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
121854	36	TTG ...	LRL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
332061	84	ATG ...	MYK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
495004	141	GTG ...	VFV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
448679	57	CTG ...	LFS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
364655	36	TTG ...	LFH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
49401	75	CTG ...	LSR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Testis
416138	111	ATG ...	MDL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
783649	36	ATG ...	MKR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
540722	57	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
134367	69	ATG ...	MRA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
1173236	123	ATG ...	MHR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
341155	57	TTG ...	LFL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
693854	57	CTG ...	LLI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
132901	75	CTG ...	LMM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell
137314	96	CTG ...	LKM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell
299946	51	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
805327	33	CTG ...	LTC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
1153391	102	TTG ...	LQK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
806781	45	GTG ...	VNR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
496878	45	CTG ...	LFQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
107833	72	ATG ...	MMR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell
25144	63	ATG ...	MVV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain
1135099	45	TTG ...	LKC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1133481	39	TTG ...	LWQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
776028	72	ATG ...	MKV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, v6-5
1122065	42	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
936064	51	ATG ...	MSF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
474805	129	GTG ...	VPK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
656004	57	TTG ...	LRF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
691234	57	TTG ...	LCG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1169710	81	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
407506	30	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
726730	96	ATG ...	MKV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1153101	57	GTG ...	VNL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
663382	69	ATG ...	MSV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, R1E
542610	54	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1158718	96	TTG ...	LVQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
546626	42	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1505047	39	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
969069	84	ATG ...	MTE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
462542	153	GTG ...	VVL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
33813	45	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
645657	33	ATG ...	MSS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
484812	207	CTG ...	LVV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1135144	39	ATG ...	MWC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
421494	60	ATG ...	MDL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
565865	66	ATG ...	MAV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
503085	57	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell
733713	48	ATG ...	MLF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E
1137051	75	GTG ...	VVP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1094824	42	TTG ...	LPL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
712865	39	GTG ...	VAV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1148711	51	ATG ...	MKT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
830353	69	GTG ...	VGG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF
680831	42	TTG ...	LNQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
103809	39	CTG ...	LSN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
4293	57	ATG ...	MTE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
969266	54	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
651457	39	TTG ...	LGC ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E

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