Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

507

ID

ENSMUST00000027252

Name

Eif5b-201

Strand

+

Biotype

protein_coding

Start-end positions

37998010-38055579

CDS Start-stop positions

37998290-38051713

CDS Relative positions

-

Sequences

Transcript sequence

ACC ...

Gene

ID

NCBI:226982

Aliases

A030003E17Rik,
BC018347, Eif5b, ENSMUSG00000026083,
IF2, MGI:2441772, NCBI:226982,
OFF:Eif5b


Chr 1

ORFs

152 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

789827 114

ATG ...

MRT ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
750770 138

CTG ...

LLK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1290350 66

AAG ...

KEK ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1219976 51

AAG ...

KRN ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1268896 123

AGG ...

RKL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
935218 51

AGG ...

RSL ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
479643 48

CTG ...

LCA ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
v6-5
727928 33

TTG ...

LKL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
667691 210

ATG ...

MIV ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
722128 39

ATG ...

MKS ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1219613 126

AAG ...

KRW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
951954 120

AAG ...

KLW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
636961 165

CTG ...

LPD ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
309800 42

ATG ...

MKT ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF
1304383 30

AAG ...

KRK ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1539462 33

TTG ...

LKK ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
650483 120

GTG ...

VGM ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
471457 114

ATG ...

MCP ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    sORF
    Upstream
MEF, Neutrophil, v6-5
1190941 69

AAG ...

KKG ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
786765 228

ATG ...

MGT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
503408 42

TTG ...

LRS ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, Spleen_B_cell,
v6-5
795880 105

ATG ...

MTL ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1307074 300

AAG ...

KRK ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
489195 141

CTG ...

LET ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, Spleen_B_cell,
v6-5
452210 90

CTG ...

LVK ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1223928 33

ATA ...

ILL ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1596 36

TTG ...

LRN ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor, v6-5
457631 87

GTG ...

VKV ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
734125 171

ATG ...

MRK ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
448120 219

TTG ...

LMR ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
502964 192

ATG ...

MGT ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Spleen_B_cell, v6-5
1219014 237

AAG ...

KRV ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
458196 138

TTG ...

LRT ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, Neutrophil,
Spleen_B_cell
387016 30

CTG ...

LIW ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
v6-5
1294134 273

AAG ...

KRV ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1183508 51

ATG ...

MSR ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, NSC
1201935 60

AAG ...

KEF ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
729993 204

GTG ...

VKN ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
814124 87

CTG ...

LPR ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, E14,
MEF, NSC, R1E
1215578 183

AGG ...

RRT ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1208806 114

ATA ...

IVW ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1516339 60

CTG ...

LCQ ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
733339 66

TTG ...

LMP ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E
644315 90

ATG ...

MCK ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
1173194 114

TTG ...

LKL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1603289 51

TTG ...

LRS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
760066 198

ATG ...

MRR ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1193588 261

ATG ...

MKK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
1293439 33

ATA ...

IRR ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
685589 39

ATG ...

MFL ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
925209 102

CTG ...

LPR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1308525 102

AAG ...

KRR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
494758 129

CTG ...

LLK ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, Spleen_B_cell,
v6-5
1117159 39

ATG ...

MLQ ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, v6-5
640316 78

GTG ...

VVS ...

Ribo-seq
GTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
458694 123

ATG ...

MLM ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
505061 204

GTG ...

VKA ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Spleen_B_cell, v6-5
546110 90

GTG ...

VQK ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
1305139 33

ACG ...

TVK ...

Ribo-seq
ACG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1140202 36

TTG ...

LQK ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1181277 219

AGG ...

RRT ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1658876 108

CTG ...

LVL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
683378 48

GTG ...

VPQ ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF
1124137 36

TTG ...

LTE ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
1195362 183

ACG ...

THK ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
457971 87

GTG ...

VES ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    sORF
    Upstream
Neutrophil, v6-5
749535 63

ATG ...

MPL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC, R1E
1215867 96

ACG ...

TTP ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
485162 120

CTG ...

LMI ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
501255 231

GTG ...

VKM ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Spleen_B_cell, v6-5
895963 147

CTG ...

LGN ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, NSC,
v6-5
1600067 39

ATG ...

MKI ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1171185 126

TTG ...

LGD ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1214510 114

AGG ...

RKL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
643870 45

ATG ...

MIG ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
450349 129

GTG ...

VRM ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
1285205 42

ACG ...

TKC ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1285739 165

ATA ...

IVW ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1291651 42

AAG ...

KKR ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
506 162

ATG ...

MRR ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, Skin_tumor,
Spleen_B_cell, v6-5
895671 36

AGG ...

RRH ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1221972 132

ACG ...

THK ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1212074 156

AGG ...

RTQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1213292 168

AAG ...

KRR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1216286 111

AAG ...

KLQ ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1221127 60

AAG ...

KKG ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1220639 57

AGG ...

RSC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
640498 180

ATG ...

MRK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
674353 81

ATG ...

MAK ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
734309 117

TTG ...

LNQ ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
809509 93

CTG ...

LVL ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
NSC, R1E, v6-5
1210425 117

ACG ...

TLA ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1223650 264

AAG ...

KRK ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
709983 273

CTG ...

LPQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
689149 45

TTG ...

LGD ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
897083 30

AAG ...

KPN ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1221951 42

AGG ...

RTT ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
458762 75

GTG ...

VRE ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    sORF
    Upstream
Neutrophil, v6-5
1307476 39

AGG ...

RRT ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
485122 81

GTG ...

VVV ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
468706 66

ATG ...

MHS ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, v6-5
697286 51

TTG ...

LVP ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF
1220225 57

ACG ...

TTK ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1195404 45

AGG ...

RWY ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
15499 30

CTG ...

LVQ ...

Ribo-seq
CTG strong 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
v6-5
729997 285

ATG ...

MKK ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC
1227743 75

ATC ...

ITY ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1124544 45

ATG ...

MQE ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, NSC,
v6-5
112387 36

TTG ...

LIL ...

Ribo-seq
TTG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
1206605 84

AAG ...

KPR ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
498710 33

TTG ...

LKP ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, Spleen_B_cell
1286561 48

AAG ...

KRM ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1220131 117

ATT ...

ILK ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
937873 207

ATA ...

IRR ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1199253 30

ATG ...

MKR ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1138104 63

TTG ...

LNQ ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
467071 216

ATG ...

MRM ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
528182 144

ATG ...

MRL ...

Ribo-seq
ATG moderate 6 sORFs_org_Mouse
Johnstone2016
    sORF
    Upstream
3T3, B_cell, BMDC,
Glioma, Liver, MEF,
MESC, Neutrophil, Spleen_B_cell
1215433 81

ATC ...

IGL ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1220190 144

AGG ...

RLE ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
469278 117

ATG ...

MIL ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
938267 57

AAG ...

KTG ...

Ribo-seq
AAG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
1203437 192

AGG ...

RTQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
491763 225

ATG ...

MKK ...

Ribo-seq
ATG 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Glioma, Liver, MEF,
MESC, Spleen_B_cell, v6-5
1160121 141

TTG ...

LNG ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1468221 114

ATG ...

MLL ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1221359 93

AAG ...

KRR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
541139 75

GTG ...

VSP ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1207417 39

AGA ...

RGR ...

Ribo-seq
AGA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1180303 177

AAG ...

KRW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
963157 45

AGG ...

RHL ...

Ribo-seq
AGG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
472187 84

TTG ...

LKC ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
724284 66

CTG ...

LGN ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, NSC
682794 66

ATG ...

MNF ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1305170 267

GTG ...

VKM ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
1193429 39

ATC ...

IKR ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
741533 117

CTG ...

LIV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
464370 99

GTG ...

VRG ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    sORF
    Upstream
E14, Neutrophil, v6-5
1702427 36

ATG ...

MNL ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1217842 159

AAG ...

KRR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
29300 36

ATG ...

MIL ...

Ribo-seq
ATG moderate 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, v6-5
1120656 36

CTG ...

LAA ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
796264 240

GTG ...

VKA ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
1189974 87

ATT ...

IRT ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
467828 135

CTG ...

LGV ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
897419 111

AAG ...

KLW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
811194 90

GTG ...

VLP ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, R1E
1282880 39

AGG ...

REG ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1200967 39

AGG ...

RKY ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
738125 222

ATG ...

MKE ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
893425 198

ATA ...

IRR ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1211343 69

AAG ...

KSG ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5