Transcript 573 | MetamORF

Transcript

ID CARD

MetamORF ID

573

ENSMUST00000027068

Name

Tram1-201

Strand

Biotype

protein_coding

Start-end positions

13564698-13589910

CDS Start-stop positions

13566323-13589722

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:72265

Aliases

1810049E02Rik,
ENSMUSG00000025935, MGI:1919515, NCBI:72265,
OFF:Tram1, Tram1, TRAMP

Chr 1

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
131993	84	GTG ...	VCG ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
470313	39	GTG ...	VRS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, R1E, Spleen_B_cell
467953	54	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Spleen_B_cell
11780	141	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
459732	54	GTG ...	VHS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, Neutrophil, NSC, Spleen_B_cell
353080	42	ATG ...	MVS ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, Neutrophil, R1E, Spleen_B_cell, v6-5
479835	66	CTG ...	LVS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, Neutrophil, NSC, Spleen_B_cell
357652	42	TTG ...	LAF ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, R1E, v6-5
1195284	30	AAG ...	KSG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1274	120	TTG ...	LVL ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis, v6-5
447476	108	GTG ...	VSS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, MEF, Neutrophil, Spleen_B_cell
136020	105	GTG ...	VHS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
125017	99	ATG ...	MLP ...	Ribo-seq	ATG		12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, v6-5
404955	66	CTG ...	LNQ ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, v6-5
483633	156	CTG ...	LRR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, Neutrophil, Spleen_B_cell
153351	117	TTG ...	LLL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
459771	39	TTG ...	LPV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Neutrophil, NSC, Spleen_B_cell
1196022	66	ATA ...	ISL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
40734	96	CTG ...	LRT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver, Spleen_B_cell, Testis
357141	33	CTG ...	LNS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, Spleen_B_cell
532101	69	CTG ...	LQA ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell
132105	99	CTG ...	LNS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell
456855	102	GTG ...	VEG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Liver, R1E, Spleen_B_cell
132103	117	CTG ...	LVS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
29883	33	GTG ...	VCG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, NSC, Spleen_B_cell
424871	39	TTG ...	LHH ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Liver, NSC, Spleen_B_cell
138214	66	GTG ...	VTR ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
298026	78	ATG ...	MGS ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
698096	39	CTG ...	LFS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
896767	60	ACG ...	TRT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
458940	36	ATG ...	MLP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
138275	108	ATG ...	MHS ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
320312	42	ATG ...	MHS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, R1E, Spleen_B_cell
466615	51	TTG ...	LLF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Spleen_B_cell
12421	105	CTG ...	LGS ...	Ribo-seq	CTG	moderate	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1215594	54	ATC ...	IRK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
934009	81	AAG ...	KTS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
130565	90	TTG ...	LPV ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1419156	207	TTG ...	LFC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
16862	261	GTG ...	VSV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	CDS sORF	B_cell, E14, Neutrophil, R1E, Skin_tumor, Testis
110601	105	TTG ...	LNF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
136953	114	TTG ...	LLF ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
144463	183	TTG ...	LRE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF
1477	72	CTG ...	LET ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Skin_tumor, Spleen_B_cell, v6-5
1425706	219	GTG ...	VFC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1074	246	GTG ...	VVF ...	Ribo-seq	GTG		10	sORFs_org_Mouse	CDS sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
1228	114	TTG ...	LVS ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
133288	132	TTG ...	LSF ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
572	123	CTG ...	LLV ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis, v6-5

Export data