Transcript 217307

Transcript

ID CARD

MetamORF ID

217307

ENSMUST00000026506

Name

Clns1a-201

Strand

Biotype

protein_coding

Start-end positions

97696634-97718879

CDS Start-stop positions

97696730-97716518

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:12729

Aliases

2610036D06Rik,
2610100O04Rik, Clci, Clcni,
Clns1a, ENSMUSG00000025439, ICLN,
MGI:109638, NCBI:12729, OFF:Clns1a

Chr 7

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1250863	105	ACG ...	TTM ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
221402	48	TTG ...	LPD ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1743899	123	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1251853	147	AGG ...	RGS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
222886	30	ATG ...	MQM ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, MEF, NSC, R1E, v6-5
1259404	54	AGG ...	RGS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1099339	51	CTG ...	LVR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1259850	171	AAG ...	KLP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1251327	42	ATC ...	IQT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1256703	171	AGG ...	RRC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
224868	54	CTG ...	LGR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF
424460	78	ATG ...	MAW ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, R1E, Spleen_B_cell, v6-5
1320774	54	TTG ...	LRY ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF
214418	57	ATG ...	MRC ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
1253399	204	AAG ...	KLP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1253182	117	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1258009	33	ATT ...	IRI ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
219112	36	TTG ...	LRM ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, v6-5
217306	51	CTG ...	LLP ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5

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