Transcript 14037 | MetamORF

Transcript

ID CARD

MetamORF ID

14037

ENSMUST00000025804

Name

Rab1b-201

Strand

Biotype

protein_coding

Start-end positions

5099207-5106996

CDS Start-stop positions

5100378-5106938

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:76308

Aliases

1110011F09Rik,
ENSMUSG00000024870, MGI:1923558, NCBI:76308,
OFF:Rab1b, Rab1b

Chr 19

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1202108	120	AGG ...	RSG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
408701	48	GTG ...	VTS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Neutrophil, NSC, R1E, Spleen_B_cell
962059	33	ACG ...	TPV ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
410211	123	GTG ...	VTS ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
963481	33	ACG ...	TSL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
401799	126	CTG ...	LVR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, R1E
1200775	39	ATC ...	IAT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
43268	174	GTG ...	VWI ...	Ribo-seq	GTG		20	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
43494	105	CTG ...	LVR ...	Ribo-seq	CTG		20	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
43139	210	ATG ...	MTL ...	Ribo-seq	ATG		24	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
43195	255	GTG ...	VTP ...	Ribo-seq	GTG		22	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
402697	75	TTG ...	LQT ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
489314	60	GTG ...	VSP ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
14758	150	TTG ...	LSW ...	Ribo-seq	TTG		21	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
14036	39	TTG ...	LSW ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
962494	75	ATG ...	MAS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Neutrophil
407710	84	GTG ...	VGH ...	Ribo-seq	GTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
14633	36	ATG ...	MTS ...	Ribo-seq	ATG		19	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1205104	99	AGG ...	RSG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1007408	153	GTG ...	VDF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
41745	48	GTG ...	VTP ...	Ribo-seq	GTG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
14264	99	ATG ...	MTL ...	Ribo-seq	ATG		24	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
963275	66	ATC ...	IAG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
41722	51	TTG ...	LVT ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
43603	246	CTG ...	LLS ...	Ribo-seq	CTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
43161	258	TTG ...	LVT ...	Ribo-seq	TTG		20	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
403585	33	GTG ...	VAA ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
961734	87	ATC ...	IAG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
14756	45	TTG ...	LWC ...	Ribo-seq	TTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
14447	63	GTG ...	VWI ...	Ribo-seq	GTG		21	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
487963	39	GTG ...	VPR ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, Spleen_B_cell
963654	168	ATT ...	ISR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
43504	126	CTG ...	LTR ...	Ribo-seq	CTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
14592	54	ATG ...	MAS ...	Ribo-seq	ATG		19	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
406620	30	GTG ...	VPA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, v6-5
962698	57	ATT ...	ISR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
724508	30	ATG ...	MPP ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, NSC
42921	63	CTG ...	LQR ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Testis, v6-5

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