Transcript 41408 | MetamORF

Transcript

ID CARD

MetamORF ID

41408

ENSMUST00000025659

Name

Zfand5-201

Strand

Biotype

protein_coding

Start-end positions

21272278-21282289

CDS Start-stop positions

21276435-21280571

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:22682

Aliases

2310057A04Rik,
5830475F03Rik, AA415485, ENSMUSG00000024750,
MGI:1278334, NCBI:22682, OFF:Zfand5,
Za20d2, Zfand5, Zfp216

Chr 19

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
42516	45	GTG ...	VFC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
401817	60	GTG ...	VVP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1204416	99	AAG ...	KRG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
411719	135	AGG ...	RRL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
41658	39	ATG ...	MWK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
406121	153	GTG ...	VHL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, Neutrophil, Spleen_B_cell
41407	48	CTG ...	LWR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver, MEF, Spleen_B_cell, Testis
405114	162	CTG ...	LSG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Spleen_B_cell
1200982	123	ATG ...	MIT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
960809	54	ACG ...	TSL ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
14346	81	ATG ...	MGI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
408690	162	CTG ...	LPG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain
42895	51	CTG ...	LFA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
724279	33	CTG ...	LHL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
976494	39	AAG ...	KNI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
721080	189	GTG ...	VCI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
961377	144	CTG ...	LTS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
42350	105	CTG ...	LAN ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF, Neutrophil, Spleen_B_cell, Testis
42374	63	ATG ...	MEC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
407954	36	TTG ...	LLQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
402379	147	CTG ...	LVR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, Spleen_B_cell
963031	132	ACG ...	TRK ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
487641	33	GTG ...	VPA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
405315	45	CTG ...	LPM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
721319	99	CTG ...	LRS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
1202707	60	AAG ...	KRG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
14461	90	GTG ...	VAF ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain

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