Transcript 39878 | MetamORF

Transcript

ID CARD

MetamORF ID

39878

ENSMUST00000025444

Name

Cxxc1-201

Strand

Biotype

protein_coding

Start-end positions

74216131-74221491

CDS Start-stop positions

74216480-74221205

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:74322

Aliases

2410002I16Rik,
5830420C16Rik, AI426635, Cfp1,
Cgbp, Cxxc1, ENSMUSG00000024560,
MGI:1921572, NCBI:74322, OFF:Cxxc1,
PHF18

Chr 18

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1630611	30	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
713385	153	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
1154489	42	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1157034	42	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1544464	36	CTG ...	LWH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
40144	42	ATG ...	MVK ...	Ribo-seq	ATG	moderate	15	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1632174	87	GTG ...	VQK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1630533	60	ATG ...	MGR ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
712712	114	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
1631866	30	GTG ...	VAT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
40702	33	ATG ...	MAA ...	Ribo-seq	ATG	strong	11	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
485488	57	TTG ...	LRP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
1631012	66	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1631734	63	GTG ...	VSA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
394222	87	ATG ...	MPG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1629709	36	GTG ...	VQK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1049672	45	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
396195	111	ATG ...	MAQ ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
40538	171	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	Testis, v6-5
713823	66	CTG ...	LRM ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1154951	33	GTG ...	VVP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1156893	48	CTG ...	LHL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1629514	39	CTG ...	LRT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
40170	105	CTG ...	LSY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	Testis
39891	84	ATG ...	MLP ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis, v6-5
39877	183	TTG ...	LAD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF Upstream	B_cell, E14, Testis, v6-5
800898	204	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1632493	39	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
39962	150	CTG ...	LNC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Testis, v6-5
801907	129	TTG ...	LSG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell

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