Transcript 13456 | MetamORF

Transcript

ID CARD

MetamORF ID

13456

ENSMUST00000025363

Name

Hbegf-201

Strand

Biotype

protein_coding

Start-end positions

36504929-36515805

CDS Start-stop positions

36506653-36515513

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:15200

Aliases

AW047313,
Dtr, Dts, ENSMUSG00000024486,
Hbegf, Hegfl, MGI:96070,
NCBI:15200, OFF:Hbegf

Chr 18

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1719495	60	GTG ...	VAA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
1629878	189	CTG ...	LTD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
1629725	204	GTG ...	VDA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
958580	171	CTG ...	LEW ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF
13455	45	GTG ...	VIV ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, Skin_tumor
959387	96	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
411421	147	CTG ...	LNR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, MEF
959542	69	GTG ...	VEP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
1197240	42	GTG ...	VIA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF
1154869	48	GTG ...	VSW ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1631100	198	CTG ...	LVG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
393334	141	GTG ...	VRV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
13504	39	GTG ...	VLR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, Skin_tumor
1199410	102	AGG ...	RTT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
395681	78	CTG ...	LDP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, R1E
958306	135	ACG ...	TNR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
1196437	81	CTG ...	LPP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Overlapping sORF Upstream	E14, MEF, NSC
959452	84	TTG ...	LLS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, NSC
1498134	33	ATG ...	MGK ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
1629547	240	CTG ...	LAG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
396546	90	CTG ...	LTL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, R1E
1156878	75	TTG ...	LSS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
1360978	36	CTG ...	LSS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
1362665	267	CTG ...	LFS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
958076	162	ACG ...	TRG ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
1155774	75	ATG ...	MPP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
713765	33	CTG ...	LVT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC

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