Transcript 13446 | MetamORF

Transcript

ID CARD

MetamORF ID

13446

ENSMUST00000025218

Name

Etf1-201

Strand

Biotype

protein_coding

Start-end positions

34902785-34932007

CDS Start-stop positions

34904988-34931654

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:225363

Aliases

AI463371,
D6Ertd109e, ENSMUSG00000024360, ERF,
ERF1, Etf1, MGI:2385071,
NCBI:225363, OFF:Etf1, SUP45L1,
TB3-1

Chr 18

ORFs

67 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
395490	54	ATG ...	MKL ...	Ribo-seq	ATG	weak	15	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
487147	75	CTG ...	LYN ...	Ribo-seq	CTG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
959638	72	ACG ...	TWR ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
393146	33	ATG ...	MNF ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E
1199112	45	ATC ...	ISL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
959825	96	ACG ...	TTP ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
486987	117	GTG ...	VLF ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
487060	111	TTG ...	LNL ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
395683	60	GTG ...	VVK ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1197545	168	CTG ...	LPI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
485799	66	TTG ...	LNL ...	Ribo-seq	TTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
959822	45	AAG ...	KYL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1196645	81	AAG ...	KLT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1199029	30	ATC ...	ICT ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
396800	33	TTG ...	LNY ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, v6-5
1198731	33	ATT ...	IWS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1197118	42	AGG ...	RTQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1197433	99	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
959397	30	AAG ...	KHA ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
485718	33	TTG ...	LEL ...	Ribo-seq	TTG	strong	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1199285	45	AAG ...	KEE ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
487017	36	TTG ...	LVE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, v6-5
1199403	126	AAG ...	KLT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1200205	48	ATA ...	INL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
803522	162	CTG ...	LWS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, v6-5
487181	219	CTG ...	LER ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
1199589	57	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
486608	72	CTG ...	LPP ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, MEF, R1E, Spleen_B_cell, v6-5
485985	33	ATG ...	MVW ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
485714	45	CTG ...	LWN ...	Ribo-seq	CTG	weak	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
486162	72	TTG ...	LTL ...	Ribo-seq	TTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1196749	30	ATA ...	ISH ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
958326	156	ACG ...	TWR ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
486741	108	TTG ...	LAR ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1198066	39	ATC ...	ITV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
394542	63	ATG ...	MVV ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, v6-5
13445	57	TTG ...	LMK ...	Ribo-seq	TTG	moderate	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
411481	171	GTG ...	VLP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12
486217	30	CTG ...	LDQ ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
486851	33	GTG ...	VEL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Spleen_B_cell
486877	117	TTG ...	LTL ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
39936	81	GTG ...	VSY ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1198634	72	ATA ...	IYP ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
713788	51	ATG ...	MDS ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, v6-5
392656	33	CTG ...	LCS ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
485887	102	CTG ...	LER ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, R1E, Spleen_B_cell
399218	84	CTG ...	LPI ...	Ribo-seq	CTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
486899	120	GTG ...	VVL ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
394392	36	CTG ...	LLC ...	Ribo-seq	CTG	moderate	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1196976	60	AGG ...	REW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
393086	36	TTG ...	LLT ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
1198825	51	AGG ...	RSI ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1197754	159	ACG ...	TEV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1200135	144	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1198362	45	ACG ...	TSG ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1200068	126	ACG ...	TEV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1196510	66	ATT ...	ISR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
40114	102	CTG ...	LPG ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
395736	39	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1198149	78	ATC ...	IAD ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
395050	75	TTG ...	LIY ...	Ribo-seq	TTG	weak	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
487075	63	CTG ...	LWI ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
958084	180	ACG ...	TTP ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
396469	57	GTG ...	VKM ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
959865	57	ATC ...	ISQ ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
398885	87	GTG ...	VLP ...	Ribo-seq	GTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
394314	36	ATG ...	MMN ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5

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