Transcript 13243 | MetamORF

Transcript

ID CARD

MetamORF ID

13243

ENSMUST00000024873

Name

Yipf4-201

Strand

Biotype

protein_coding

Start-end positions

74489493-74500277

CDS Start-stop positions

74489716-74499108

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:67864

Aliases

2310034L04Rik,
ENSMUSG00000024072, MGI:1915114, NCBI:67864,
OFF:Yipf4, Yipf4

Chr 17

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
36243	291	ATG ...	MVL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell, Testis
481491	36	CTG ...	LCS ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
701401	45	TTG ...	LVC ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, NSC, v6-5
701781	159	CTG ...	LLW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, B_cell
389479	60	TTG ...	LKM ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
391036	78	ATG ...	MAG ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
381168	39	ATG ...	MRI ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
955204	57	ATC ...	IYS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
386855	60	CTG ...	LGS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, v6-5
390713	45	CTG ...	LKI ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
381763	45	CTG ...	LTS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
1191735	78	AAG ...	KRR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1195374	51	AGG ...	RIL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
382703	30	CTG ...	LKI ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, v6-5
387791	63	ATG ...	MAG ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
37118	255	GTG ...	VLA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, Spleen_B_cell, Testis
379989	105	GTG ...	VKN ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, v6-5
954812	60	ATA ...	IFI ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
482121	42	GTG ...	VCS ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
381748	45	TTG ...	LKM ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
388134	39	TTG ...	LDI ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
383186	30	TTG ...	LHM ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, v6-5
383003	39	CTG ...	LGC ...	Ribo-seq	CTG	strong	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
382005	54	ATG ...	MDY ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
705317	69	CTG ...	LRL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, B_cell
955662	54	ATT ...	ITS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
708569	33	TTG ...	LDL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, v6-5
704213	165	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	3T3, B_cell
481349	45	CTG ...	LAS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
702106	126	GTG ...	VLG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, B_cell
704417	63	TTG ...	LGA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
36296	285	CTG ...	LSG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell, Testis
479746	30	CTG ...	LPT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, NSC, Spleen_B_cell, v6-5
706571	87	CTG ...	LVG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF Upstream	3T3, B_cell
702378	129	GTG ...	VVL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	3T3, B_cell
1191706	36	AGG ...	RIL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1192218	30	AAG ...	KRL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
956053	93	ATT ...	IKP ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
37078	231	GTG ...	VRP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Testis
1192590	48	ATC ...	ILT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
13242	54	ATG ...	MRI ...	Ribo-seq	ATG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5

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