Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

12927

ID

ENSMUST00000024599

Name

Igf2r-201

Strand

-

Biotype

protein_coding

Start-end positions

12682406-12769664

CDS Start-stop positions

12683710-12769533

CDS Relative positions

-

Sequences

Transcript sequence

CCC ...

Gene

ID

NCBI:16004

Aliases

AI661837,
CD222, CI-MPR, ENSMUSG00000023830,
Igf2r, M6P/IGF2R, MGI:96435,
Mpr300, NCBI:16004, OFF:Igf2r


Chr 17

ORFs

163 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1626696 33

CTG ...

LGG ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
386633 60

GTG ...

VRM ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
702129 78

GTG ...

VVH ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
703452 108

ATG ...

MAA ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver
955427 63

AGG ...

REV ...

Ribo-seq
AGG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
957072 87

AAG ...

KSQ ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
703260 84

CTG ...

LPQ ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
708076 84

ATG ...

MWM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
705877 93

TTG ...

LRM ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
701192 60

TTG ...

LGA ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
710194 96

GTG ...

VRR ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, NSC
480560 33

GTG ...

VMS ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
711467 102

TTG ...

LNG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
712322 72

GTG ...

VTC ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
1718914 111

GTG ...

VTL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
957606 171

CTG ...

LLC ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
701756 45

CTG ...

LQP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
704610 96

CTG ...

LSC ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1412518 87

GTG ...

VGT ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
702261 132

CTG ...

LHL ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
703150 96

GTG ...

VSV ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
1152944 108

TTG ...

LHW ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
701942 102

GTG ...

VWT ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1190828 72

ATC ...

IRK ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
957296 147

ATG ...

MGV ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
701289 72

GTG ...

VCI ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
v6-5
706467 117

TTG ...

LCA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
701346 81

CTG ...

LLA ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
710629 249

CTG ...

LRL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1151325 126

CTG ...

LVC ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
705319 120

CTG ...

LQD ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver
954690 144

AGG ...

RWL ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
706952 105

CTG ...

LRL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1150812 45

GTG ...

VAN ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, v6-5
711883 159

TTG ...

LSG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
710424 129

GTG ...

VTT ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
380593 39

CTG ...

LRE ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
710619 252

TTG ...

LSA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
481632 63

ATG ...

MET ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, Spleen_B_cell
954221 117

AGG ...

RKA ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1455653 51

TTG ...

LHR ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
702055 84

CTG ...

LLW ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
712097 87

CTG ...

LQP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
706133 60

TTG ...

LTV ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, NSC
478873 51

ATG ...

MIL ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, Spleen_B_cell
703388 81

CTG ...

LGT ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
800061 57

ATG ...

MRA ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, v6-5
386943 84

CTG ...

LEE ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
704860 36

ATG ...

MPP ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
955994 87

ACG ...

TAL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1628298 183

ATG ...

MGS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
710452 156

TTG ...

LCM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
710688 141

CTG ...

LPV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
956984 57

AAG ...

KLT ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
706183 129

GTG ...

VSS ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
954829 66

ATA ...

IRL ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1152632 36

ATG ...

MCI ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, v6-5
1627602 57

CTG ...

LQI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
703716 96

CTG ...

LKV ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
711992 81

ATG ...

MWM ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC
710139 144

CTG ...

LQI ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
711244 54

CTG ...

LAA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
956821 78

CTG ...

LSA ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, v6-5
798532 45

TTG ...

LCL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
1627772 39

ATG ...

MED ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
957121 180

ATG ...

MIL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
957217 177

ATA ...

ILL ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
797685 57

ATG ...

MTA ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, Glioma,
Liver, MEF, MESC
478506 39

CTG ...

LEV ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1151342 33

CTG ...

LEM ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
711116 144

CTG ...

LLP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
711944 273

GTG ...

VSS ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
956737 78

AGG ...

RPR ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1192383 114

ATC ...

IRT ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
482258 39

CTG ...

LTR ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
711568 255

TTG ...

LSG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
704107 90

TTG ...

LSG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
383267 66

ATG ...

MKV ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
707965 111

CTG ...

LMA ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver
391786 66

ATG ...

MKI ...

Ribo-seq
ATG 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Glioma,
Liver, MEF, MESC,
v6-5
711148 177

ATG ...

MAA ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
710968 219

TTG ...

LFR ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
711554 87

CTG ...

LWA ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, NSC
386036 84

ATG ...

MQF ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
956533 57

AAG ...

KRI ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1627026 30

CTG ...

LWG ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
957223 168

TTG ...

LTL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
795671 39

TTG ...

LSG ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
1150029 33

TTG ...

LKL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
704835 87

ATG ...

MRA ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
705934 90

GTG ...

VAL ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
712049 297

TTG ...

LQN ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1625409 141

TTG ...

LFR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1150423 45

GTG ...

VDH ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
385236 87

CTG ...

LVA ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1153543 36

TTG ...

LYS ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
709404 93

CTG ...

LSC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
956743 66

GTG ...

VMA ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
708669 30

TTG ...

LCA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
711246 114

GTG ...

VCI ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
704016 114

CTG ...

LVL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
711966 117

CTG ...

LCV ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
711589 189

CTG ...

LQD ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
704232 63

GTG ...

VAY ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
712108 270

TTG ...

LSG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
705831 63

GTG ...

VED ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
1151458 60

GTG ...

VWC ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1497988 51

ATG ...

MMT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC
1152403 60

CTG ...

LPR ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
855702 54

CTG ...

LWW ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
1191890 66

ATT ...

ITL ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
710392 165

ATG ...

MSL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
957135 84

ACG ...

TAL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1626943 60

ATG ...

MKV ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
709916 150

ATG ...

MKE ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1151202 39

TTG ...

LSL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
954594 96

ATC ...

IWM ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
955939 66

ATA ...

IKD ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
12926 33

GTG ...

VYC ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor, v6-5
955735 132

AGG ...

RKL ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1191391 90

AGG ...

RMR ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1359676 39

GTG ...

VPK ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
955754 90

ACG ...

TEE ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
383217 99

TTG ...

LTP ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1626302 45

CTG ...

LIL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
704567 42

GTG ...

VPQ ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
955173 90

ATG ...

MWC ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
707365 99

CTG ...

LDL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
957181 162

ACG ...

TRP ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
855330 96

ATG ...

MSL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
705945 75

GTG ...

VTC ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1627175 39

TTG ...

LYS ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
711766 75

CTG ...

LHS ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
NSC
957133 78

CTG ...

LLA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1150106 96

CTG ...

LQG ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
712184 180

CTG ...

LMA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
712026 90

ATG ...

MTD ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
707394 69

ATG ...

MLW ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
707485 60

TTG ...

LNG ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver,
MEF
957475 207

ATA ...

IRP ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
710285 189

GTG ...

VSS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
711556 135

ATG ...

MIV ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC
957407 255

AGG ...

RQN ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
955444 60

GTG ...

VGL ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
704637 114

ATG ...

MTF ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, Glioma,
Liver, MEF, MESC
957123 63

GTG ...

VMA ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
712013 198

ATG ...

MTC ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Glioma,
Liver, MEF, MESC
1542224 54

GTG ...

VSA ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1716734 60

CTG ...

LAT ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
954646 87

AAG ...

KSQ ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
710913 261

ATG ...

MKL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
386473 102

CTG ...

LLT ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
385771 84

GTG ...

VAT ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1153061 42

TTG ...

LSG ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
957645 108

ATC ...

IPY ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1195237 108

ATT ...

ITL ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1195618 123

ACG ...

TSG ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
708518 54

TTG ...

LCL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
709233 102

ATG ...

MAV ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
798487 72

TTG ...

LTP ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF
1629168 153

CTG ...

LTA ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1718709 117

GTG ...

VTV ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
712042 75

ATG ...

MVT ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5