Transcript 8817 | MetamORF

Transcript

ID CARD

MetamORF ID

8817

ENSMUST00000023918

Name

Ivns1abp-201

Strand

Biotype

protein_coding

Start-end positions

151344477-151364422

CDS Start-stop positions

151350999-151363365

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:117198

Aliases

1190004M08Rik,
1700126I16Rik, AA960440, ENSMUSG00000023150,
HSPC068, Ivns1abp, MGI:2152389,
mKIAA0850, NCBI:117198, ND1,
Nd1-L, Nd1-S, NS-1,
NS1-BP, OFF:Ivns1abp

Chr 1

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
748423	36	GTG ...	VEN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
45467	75	ATG ...	MNF ...	Ribo-seq	ATG		10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, R1E, Testis
798345	36	GTG ...	VEN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
1632721	30	ATG ...	MIQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
129226	51	GTG ...	VGS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF
939333	33	ATC ...	ITE ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
321743	54	GTG ...	VEK ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, v6-5
804509	234	GTG ...	VVT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1273042	51	AAG ...	KYS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
306741	36	ATG ...	MIS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF
131797	39	GTG ...	VMF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF
363620	30	TTG ...	LMT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
18834	33	CTG ...	LIT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Testis
8816	33	TTG ...	LSE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, R1E, Skin_tumor
36897	36	ATG ...	MHD ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, Brain, C2C12, E14, Liver, R1E, Testis
1712928	36	TTG ...	LVA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
708361	84	GTG ...	VVI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
143847	36	ATG ...	MFD ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF
1449839	30	GTG ...	VDQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1219170	63	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	E14
9093	45	CTG ...	LGE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, Skin_tumor
1166262	75	GTG ...	VTH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
471924	39	TTG ...	LEL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, R1E
789194	48	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1287325	42	AGG ...	RDS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
306928	48	TTG ...	LKS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
736599	87	ATG ...	MET ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E
1706544	39	TTG ...	LLV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
786782	51	TTG ...	LKI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
752442	72	TTG ...	LAV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1284246	42	ATG ...	MIH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1707138	33	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1198068	78	ATA ...	ITE ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
792793	231	GTG ...	VTC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
55296	51	ATG ...	MTQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, R1E, Testis
1712244	51	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
336211	99	CTG ...	LCH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
696228	216	GTG ...	VRR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
405094	99	ATG ...	MED ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, v6-5
1142263	42	GTG ...	VCS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
544512	90	ATG ...	MDR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
535682	81	CTG ...	LRC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
408637	39	CTG ...	LDP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF
1227808	48	AGG ...	RDS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1630763	42	GTG ...	VWR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
25016	57	ATG ...	MWR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
790281	249	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
332093	39	ATG ...	MII ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
302421	126	GTG ...	VPG ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, v6-5
483656	42	ATG ...	MIQ ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E
707943	30	TTG ...	LEV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1194807	78	ATG ...	MDR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
729136	72	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
45967	99	CTG ...	LQP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, R1E, Testis
49173	81	CTG ...	LEM ...	Ribo-seq	CTG		9	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Testis
1155667	57	CTG ...	LHL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
411828	39	ATA ...	IRK ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
1705730	54	ATG ...	MGN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
332302	33	GTG ...	VTV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
1579743	39	ATG ...	MWW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1716058	72	GTG ...	VAL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
33823	39	ATG ...	MMH ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, R1E, Testis
450649	63	ATG ...	MVL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF

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