Transcript 682039

Transcript

ID CARD

MetamORF ID

682039

ENSMUST00000023749

Name

Tmbim6-201

Strand

Biotype

protein_coding

Start-end positions

99392882-99410049

CDS Start-stop positions

99401608-99408498

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:110213

Aliases

5031406P05Rik,
Bi1, ENSMUSG00000023010, MGI:99682,
NCBI:110213, OFF:Tmbim6, Tegt,
Tmbim6

Chr 15

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
30636	78	ATG ...	MPV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1700594	72	CTG ...	LWV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
31999	54	TTG ...	LWR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
31572	36	CTG ...	LAY ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
11908	87	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
366219	48	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
359997	30	ATG ...	MPG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
11968	78	TTG ...	LIL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
30834	33	ATG ...	MSM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
11545	150	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
11986	93	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
11433	144	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1700526	126	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
1676108	33	CTG ...	LQL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
33098	66	ATG ...	MSM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
32933	111	ATG ...	MPV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
356349	30	TTG ...	LAD ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
12106	51	CTG ...	LNT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
11988	60	TTG ...	LRR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
32311	69	TTG ...	LHY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
32686	102	TTG ...	LHY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
364873	69	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
33176	87	TTG ...	LWR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14

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