Transcript 35528 | MetamORF

Transcript

ID CARD

MetamORF ID

35528

ENSMUST00000023686

Name

Tmem50b-201

Strand

Biotype

protein_coding

Start-end positions

91574503-91597800

CDS Start-stop positions

91576113-91587040

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:77975

Aliases

AU015466,
AU019872, B230114J08Rik, ENSMUSG00000022964,
MGI:1925225, NCBI:77975, OFF:Tmem50b,
Tmem50b

Chr 16

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
793834	72	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
377117	42	GTG ...	VHM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
378304	75	CTG ...	LPG ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
368373	39	TTG ...	LTR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
369411	54	ATG ...	MLY ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
372692	42	ATG ...	MPR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
35527	285	TTG ...	LAD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	Testis
378064	45	TTG ...	LVH ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell
953677	105	ATA ...	ITS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
368190	48	GTG ...	VRC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
378206	231	CTG ...	LRI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	CDS sORF	Brain, Neutrophil, R1E, v6-5
376949	81	CTG ...	LLL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, Spleen_B_cell
378585	42	CTG ...	LCS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
377231	36	ATG ...	MLL ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
376329	84	GTG ...	VSV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil
378075	75	TTG ...	LTG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil
793983	90	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
33969	48	ATG ...	MRT ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Overlapping sORF Upstream	B_cell, Brain, C2C12, Glioma, Liver, MEF, MESC, v6-5
375389	36	GTG ...	VDP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
377982	210	CTG ...	LSP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	CDS sORF	Brain, E14, MEF, Neutrophil, R1E, v6-5
368748	51	CTG ...	LYP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
374756	33	TTG ...	LFN ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, MEF, v6-5
952489	81	AAG ...	KSS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
370110	87	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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