Transcript 12142 | MetamORF

Transcript

ID CARD

MetamORF ID

12142

ENSMUST00000023467

Name

Pak2-201

Strand

Biotype

protein_coding

Start-end positions

32016290-32079342

CDS Start-stop positions

32020180-32052362

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:224105

Aliases

5330420P17Rik,
A130002K10Rik, AI836325, D16Ertd269e,
ENSMUSG00000022781, MGI:1339984, mKIAA4182,
NCBI:224105, OFF:Pak2, PAK-2,
Pak2

Chr 16

ORFs

102 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
376821	72	CTG ...	LGR ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
699285	51	ATG ...	MWR ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
378607	162	ATG ...	MMK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell
951182	249	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
374584	54	ATG ...	MLT ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC, Spleen_B_cell
952165	66	ATG ...	MCF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
34353	66	ATG ...	MMM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Spleen_B_cell, Testis
375480	54	TTG ...	LST ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, Spleen_B_cell, v6-5
368735	33	CTG ...	LGR ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
376480	231	TTG ...	LFK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF
477099	192	TTG ...	LPK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
378263	150	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, Spleen_B_cell
474785	48	TTG ...	LLS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, NSC, Spleen_B_cell
950731	69	AGG ...	RRA ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
377002	129	ATG ...	MLA ...	Ribo-seq	ATG		18	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
477355	231	TTG ...	LPK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
950938	114	AGG ...	RKR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
953816	180	ACG ...	TAS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
367597	93	CTG ...	LTS ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
377819	135	GTG ...	VGA ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
377630	168	ATG ...	MMM ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
953709	72	ACG ...	TKR ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
952291	78	ACG ...	TQY ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1189205	69	ATC ...	IGV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
377884	258	CTG ...	LFQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
371202	138	GTG ...	VGA ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
376704	93	TTG ...	LTY ...	Ribo-seq	TTG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
34639	57	ATG ...	MKT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell, Testis
952532	60	ACG ...	TKR ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
377747	144	TTG ...	LST ...	Ribo-seq	TTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
370625	42	CTG ...	LFH ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
475168	150	CTG ...	LRL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, Spleen_B_cell
12141	51	ATG ...	MWR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Skin_tumor
375623	51	TTG ...	LTV ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, Spleen_B_cell
372862	36	TTG ...	LAL ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, NSC, R1E, Spleen_B_cell
377936	150	CTG ...	LIL ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
372106	84	TTG ...	LTY ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
795314	291	TTG ...	LWP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
34377	33	TTG ...	LPL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Neutrophil, Testis
1186436	102	AAG ...	KPM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
953692	42	AGT ...	SVY ...	Ribo-seq	AGT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
477541	93	CTG ...	LEQ ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell
953700	174	AGG ...	RKM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
368538	51	CTG ...	LDG ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
376378	159	ATG ...	MKT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell
477415	204	CTG ...	LAQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
475174	33	GTG ...	VFT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
377349	120	TTG ...	LML ...	Ribo-seq	TTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
377131	165	ATG ...	MMM ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell
370467	30	TTG ...	LML ...	Ribo-seq	TTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1188480	72	GTG ...	VTM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1188440	33	AGG ...	RRW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
367998	63	CTG ...	LNR ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell
1189147	153	ACG ...	TLL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
976134	249	AGG ...	RKK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
369409	60	ATG ...	MMK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Spleen_B_cell
377835	135	TTG ...	LPL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
375072	60	CTG ...	LIL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell, v6-5
697024	60	ATG ...	MEL ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E
368504	39	ATG ...	MLA ...	Ribo-seq	ATG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
34974	48	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Testis
477835	120	CTG ...	LPS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, Neutrophil, Spleen_B_cell
374732	75	CTG ...	LLQ ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, NSC, Spleen_B_cell
477145	189	CTG ...	LRL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
477312	168	ATG ...	MGF ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
371574	36	TTG ...	LEH ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell
370718	30	ATG ...	MAS ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell
369503	93	CTG ...	LSS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Neutrophil, NSC, Spleen_B_cell
694357	33	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC, v6-5
377067	126	TTG ...	LAL ...	Ribo-seq	TTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
370022	42	GTG ...	VPS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, Spleen_B_cell
375015	36	ATG ...	MVS ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
1188085	51	ACG ...	TLL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1186262	69	ATC ...	IGV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
372165	96	ATG ...	MVP ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, R1E, Spleen_B_cell, v6-5
1189133	111	AAG ...	KPM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
476604	48	CTG ...	LEQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, NSC, Spleen_B_cell, v6-5
373887	66	TTG ...	LVI ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC, Spleen_B_cell
1860756	51	CTG ...	LFH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
477605	78	CTG ...	LPL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell
951814	141	ACG ...	TAS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
476418	165	CTG ...	LAQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, Neutrophil, Spleen_B_cell
477664	54	TTG ...	LKE ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
951695	39	ATC ...	IQK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
369962	45	GTG ...	VVP ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, Spleen_B_cell
476033	45	TTG ...	LKE ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, R1E, Spleen_B_cell, v6-5
1186776	33	AGG ...	RGP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
951280	72	AGG ...	RKM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
376456	105	ATG ...	MVP ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
692454	51	CTG ...	LPS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
953271	33	AAG ...	KTS ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
367715	78	GTG ...	VPR ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
367621	63	GTG ...	VIL ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell
377229	135	GTG ...	VTM ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
372903	63	ATG ...	MMM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Spleen_B_cell
377298	30	ATG ...	MAS ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell
376323	129	ATG ...	MCF ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
951225	126	ACG ...	TAA ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
692930	51	CTG ...	LNF ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E
377837	39	CTG ...	LRK ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
477728	60	TTG ...	LPP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
376951	210	CTG ...	LAQ ...	Ribo-seq	CTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell

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